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SCNpilot_expt_500_p_scaffold_5119_1

Organism: SCNPILOT_EXPT_1000_BF_Afipia_63_13

partial RP 36 / 55 MC: 1 BSCG 36 / 51 MC: 4 ASCG 10 / 38
Location: 2..637

Top 3 Functional Annotations

Value Algorithm Source
Response regulator PleD {ECO:0000313|EMBL:EYR79251.1}; EC=2.7.7.65 {ECO:0000313|EMBL:EYR79251.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 56.4
  • Coverage: 188.0
  • Bit_score: 207
  • Evalue 1.60e-50
GGDEF domain protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JGY8_OLICO similarity UNIREF
DB: UNIREF100
  • Identity: 51.0
  • Coverage: 194.0
  • Bit_score: 196
  • Evalue 3.30e-47
diguanylate cyclase similarity KEGG
DB: KEGG
  • Identity: 51.0
  • Coverage: 194.0
  • Bit_score: 196
  • Evalue 1.10e-47

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 636
GCGATGTTGCCGGTGGTCGGCACGACGGTCTTCCTTCTGATGTGCTCCGACAGCCTGAAACGGCAACTGGAATCCGCGGCTTCGACGGACTACCTCACCGGATTGCCGAATCGCAGAACACTCGCGAGATGCGGCAAGGAGGCTTTTCAGAACGCCAGGCAAGAGAGAGCCGAGCTGTTTGTCGCGATCTTCGATATGGACAACTTCAAGTCGATCAACGACACCTTCGGCCACGAGGGCGGCGATCAGGCGCTTATTCATGTCGCCGGACTGCTGCGCGACCGGCTTGGCACATTCGGCATGATCGCACGCACCGGCGGCGAAGAATTCGCCCTGTTGATGCCCCGCACCGGCCGCGGTGAAGGCTTGGCGCGCATTGAGGAGGCGCGGTCCGCGATCGAACATGGACGCTTCCGCGTCGGCCCCAACGAAGTTCCTCTCACGATATCGGGCGGCGCCACGACATTCTGCGCCACAGATACAATATTCGACGACATTCTCCGGCGCGCCGATCAGGCGCTTTACAAAGCCAAGGCCAACGGACGCAACCGCATCGAATTCGCGCCGCTCGATTCGCTTTCGCCCGCCCGCCAAAGCGACAACGCTGCATCCCACCGCCGATTCGCCCGACGTTGA
PROTEIN sequence
Length: 212
AMLPVVGTTVFLLMCSDSLKRQLESAASTDYLTGLPNRRTLARCGKEAFQNARQERAELFVAIFDMDNFKSINDTFGHEGGDQALIHVAGLLRDRLGTFGMIARTGGEEFALLMPRTGRGEGLARIEEARSAIEHGRFRVGPNEVPLTISGGATTFCATDTIFDDILRRADQALYKAKANGRNRIEFAPLDSLSPARQSDNAASHRRFARR*