ggKbase home page

SCNpilot_expt_500_p_scaffold_18441_5

Organism: SCNPILOT_EXPT_1000_BF_Afipia_63_13

partial RP 36 / 55 MC: 1 BSCG 36 / 51 MC: 4 ASCG 10 / 38
Location: comp(2597..2749)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor RpoD n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PBI6_9BRAD similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 50.0
  • Bit_score: 101
  • Evalue 2.10e-19
primary sigma factor; K03086 RNA polymerase primary sigma factor similarity KEGG
DB: KEGG
  • Identity: 100.0
  • Coverage: 50.0
  • Bit_score: 101
  • Evalue 6.50e-20
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=693986 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium oryzae CBMB20.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 50.0
  • Bit_score: 101
  • Evalue 2.90e-19

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Methylobacterium oryzae → Methylobacterium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 153
GGCATCGGCATGAACACCGATCACACGCTGGAGGAAGTCGGCCAGCAGTTCTCGGTGACCCGCGAACGCATCCGCCAGATCGAGGCGAAGGCGCTGCGCAAGCTGAAGCATCCCAGCCGGTCAAGGAAGCTGCGGAGCTTCCTCGACAACTAA
PROTEIN sequence
Length: 51
GIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLDN*