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SCNpilot_expt_500_p_scaffold_18531_3

Organism: SCNPILOT_EXPT_1000_BF_Afipia_63_13

partial RP 36 / 55 MC: 1 BSCG 36 / 51 MC: 4 ASCG 10 / 38
Location: 967..1587

Top 3 Functional Annotations

Value Algorithm Source
50S ribosomal protein L4 n=1 Tax=Afipia sp. 1NLS2 RepID=D6VAE3_9BRAD similarity UNIREF
DB: UNIREF100
  • Identity: 96.6
  • Coverage: 206.0
  • Bit_score: 394
  • Evalue 6.20e-107
  • rbh
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 96.6
  • Coverage: 206.0
  • Bit_score: 394
  • Evalue 8.80e-107
rplD; 50S ribosomal protein L4; K02926 large subunit ribosomal protein L4 similarity KEGG
DB: KEGG
  • Identity: 94.2
  • Coverage: 206.0
  • Bit_score: 384
  • Evalue 2.70e-104
  • rbh

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Taxonomy

Afipia sp. 1NLS2 → Afipia → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 621
ATGGAATTGAACGTCACCACTCTTGAGGGTAAGGCCGCCGGTTCGGTCAAGCTGTCGGACGAGATCTTCGGTCTCGAGCCGCGCACGGACATTATCCAGCGCGTCGTGAACTGGCAGCTCGCCAAGCGTCAGGCCGGTACGCACAAGGCCAAGGGCCGTGCTGAAGTCTGGCGCACCGGCAAGAAGATGTACAAGCAGAAGGGCACCGGTGGCGCCCGTCACGGCTCGGCCCGCGTGCCGCAGTTCCGCGGCGGTGGTCGCGCGTTCGGCCCGGTGGTGCGCAGCCATGCGCACGACCTGCCGAAGAAGGTTCGCGCGCTCGGCCTGCGTCATGCTCTGTCGGCCAAGGCGAAGGATGGCGGTCTTGTCGTGATCGACAATACCGAGCTGAAGGACGCCAAGACCAAGGCGCTGATCGGCCACTTCTCGGGGCTCGGCCTGACCAGCGCGCTGATCATCGACGGCGCCGAAGTGAATAACGGCTTTGCACAGGCCGCCCGCAACATCCCGCAGATCGACGTGCTGCCGATCCAGGGCATCAACGTCTATGACATCCTGCGCCGGCAGAAACTGGTTCTGACCAAGGCGGCTCTCGATGCGTTGGAGGCGCGCTTCAAATGA
PROTEIN sequence
Length: 207
MELNVTTLEGKAAGSVKLSDEIFGLEPRTDIIQRVVNWQLAKRQAGTHKAKGRAEVWRTGKKMYKQKGTGGARHGSARVPQFRGGGRAFGPVVRSHAHDLPKKVRALGLRHALSAKAKDGGLVVIDNTELKDAKTKALIGHFSGLGLTSALIIDGAEVNNGFAQAARNIPQIDVLPIQGINVYDILRRQKLVLTKAALDALEARFK*