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SCNpilot_expt_500_p_scaffold_21205_3

Organism: SCNPILOT_EXPT_1000_BF_Afipia_63_13

partial RP 36 / 55 MC: 1 BSCG 36 / 51 MC: 4 ASCG 10 / 38
Location: 896..2434

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor RpoD n=2 Tax=Bradyrhizobiaceae RepID=F7QFT6_9BRAD similarity UNIREF
DB: UNIREF100
  • Identity: 91.1
  • Coverage: 519.0
  • Bit_score: 908
  • Evalue 3.20e-261
  • rbh
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 91.1
  • Coverage: 519.0
  • Bit_score: 908
  • Evalue 4.50e-261
rpoD2; RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor similarity KEGG
DB: KEGG
  • Identity: 88.3
  • Coverage: 515.0
  • Bit_score: 875
  • Evalue 7.20e-252

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Taxonomy

Bradyrhizobiaceae bacterium SG-6C → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1539
ATGGCCACCAAGGCGAAGACGGTAGTTCTCAAGGACAAAGAGAAGGATCAGAAGGCCGCCGATGCTCCCGAGAAGGACAGCGCCGACGCGCCTTCGCCGTTGCTCGACCTGTCGGACGCCGCCGTCAAGAAGATGATCAAGCAGGCCAAGAAGCGCGGCTTCGTGACCTTCGATCAGCTCAACGAAGTGCTGCCTTCCGACACGACCTCGCCCGAACAGATCGAAGACATCATGGCGATGCTCTCCGACATGGGCATCAACGTCTCCGAATCCGACGACGCCAACGACGAGGACGAGGAGAAGCAGGAGGACGGCGACGATGAGACCGATAACGAACTCGTCGAGGTCACCTCCAAGGCCGTCACCGAAACCAAGAAATCGGAGCCCGGCGAGCGCACCGACGATCCCGTGCGCATGTATCTGCGCGAGATGGGCACCGTCGAGCTGCTGTCGCGCGAGGGCGAAATCGCCATCGCCAAGCGCATCGAGGCCGGCCGCGAGGCGATGATCGCCGGGCTGTGCGAAAGCCCGCTGACCTTCCAGGCCATCATCATCTGGCGCGACGAGCTCAACGAAGGAAAGATCTTCCTGCGCGACATCATCGACCTGGAAGCGACCTATGCCGGGCCCGATGCCAAGAACAACATGAACCCGGCGATGATCGCCGGCCCCGCCGGTCCGGACGGCCAGCCGACCAGCGCGGTCGTCAACGGTGACGGCACCGTGCAGGTGATCGCCGCCGTCGCGCCCGCGCCGCCGGCCGCGCCGCCCTCGCCGACACCGTTCCGCCCCGCGCCCGCCGCGGGCGAAGGCGCCGCCGCGCCCGAGGAGGACGAGGACGACGAGTTCGAGAACCAGATGTCGCTCGCCGCGATCGAGGCCGAGCTGAAGCCGAAGGTCGTGGAGATCTTCGACCGCATCGCCGACAGCTACAAGAAGCTGCGCCGCCTGCAGGAGCAGGACATCCAGAACCAGCTCGAGAGCGCCTCGCAGGGGCCCTCGCTCTCGCCCTCGCAGGAGCGCAAGTACAAGAAGCTGAAGGACGAGATCATCGTCGAGGTGAAGTCGCTGCGGCTCAACCAGGCGCGCATCGACAGCCTCGTCGAGCAGCTCTACGACATCAACAAGCGGCTGGTGTCCTATGAGGGCCGCCTGTTCCGCCTCGGCGACAGCCACGGCGTCGGCCGCGAGGACTTCCTCAAGAACTACACCGGCTCGGAGCTCGATCCGCGCTGGCTCAACCGCGTCTCGAAACTCGCCGCCAAGGGCTGGAAGAATTTCGTCGCGGTGGAGAAGGACCGCATCAAGGAGCTGCGCCACGAGATCCAGCAACTCGCGGCGCTGACCGGGCTCGAAATCGGCGAATTCCGCAAGATCGTGCACTCGGTGCAGAAGGGCGAGCGCGAGGCGCGGCAGGCGAAGAAGGAAATGGTGGAGGCCAACCTGCGCCTCGTCATCTCCATCGCCAAGAAATACACGAACCGCGGCCTGCAGTTCCTCGACCTGATTCAGGAAGGCAACATCGGCCTGATGAAGGCG
PROTEIN sequence
Length: 513
MATKAKTVVLKDKEKDQKAADAPEKDSADAPSPLLDLSDAAVKKMIKQAKKRGFVTFDQLNEVLPSDTTSPEQIEDIMAMLSDMGINVSESDDANDEDEEKQEDGDDETDNELVEVTSKAVTETKKSEPGERTDDPVRMYLREMGTVELLSREGEIAIAKRIEAGREAMIAGLCESPLTFQAIIIWRDELNEGKIFLRDIIDLEATYAGPDAKNNMNPAMIAGPAGPDGQPTSAVVNGDGTVQVIAAVAPAPPAAPPSPTPFRPAPAAGEGAAAPEEDEDDEFENQMSLAAIEAELKPKVVEIFDRIADSYKKLRRLQEQDIQNQLESASQGPSLSPSQERKYKKLKDEIIVEVKSLRLNQARIDSLVEQLYDINKRLVSYEGRLFRLGDSHGVGREDFLKNYTGSELDPRWLNRVSKLAAKGWKNFVAVEKDRIKELRHEIQQLAALTGLEIGEFRKIVHSVQKGEREARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKA