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SCNpilot_expt_500_p_scaffold_28974_2

Organism: SCNPILOT_EXPT_1000_BF_Afipia_63_13

partial RP 36 / 55 MC: 1 BSCG 36 / 51 MC: 4 ASCG 10 / 38
Location: 266..1636

Top 3 Functional Annotations

Value Algorithm Source
Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Afipia sp. 1NLS2 RepID=D6V6F0_9BRAD similarity UNIREF
DB: UNIREF100
  • Identity: 92.3
  • Coverage: 456.0
  • Bit_score: 831
  • Evalue 3.40e-238
  • rbh
Two component, sigma54 specific, transcriptional regulator, Fis family {ECO:0000313|EMBL:EFI51897.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 92.3
  • Coverage: 456.0
  • Bit_score: 831
  • Evalue 4.70e-238
ntrX; nitrogen assimilation regulatory protein NtrX; K13599 two-component system, NtrC family, nitrogen regulation response regulator NtrX similarity KEGG
DB: KEGG
  • Identity: 91.0
  • Coverage: 456.0
  • Bit_score: 819
  • Evalue 5.50e-235
  • rbh

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Taxonomy

Afipia sp. 1NLS2 → Afipia → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1371
ATGGCGAATGACATTCTGATCGTCGATGATGAAGCCGATATCCGTGATCTGGTCGCGGGCATTCTCGACGATGAAGGGTTCAAGACCCGCACGGCGCGGGACAGCGATTCCGCGCTGGCGGAAGTCTCCAGCCGCCGTCCGAGCCTGATCTTCCTCGACATCTGGATGCAGGGCAGCAAGCTCGACGGTCTGCAACTGCTCGAGCAGATCAAGAAGGATTTTCCCGACGTTCCGGTGGTGATGATCTCCGGCCATGGCAACATCGAGACCGCTGTCGCGGCGATCAAGCGCGGCGCCTATGATTTCATCGAGAAGCCGTTCAAGGCCGACCGTCTGGTGCTGGTGGCCGAGCGCGCGCTGGAGACCTCGCGTCTCAAGCGCGAGGTGCGCGAGCTCAAGCATCTTGCGCCGTCCGCCGGAAATCTGATCGGCCGCTCGCCCTGCGTGAACCAGCTTCGCCAGACCATCGACCGCGCCGCCAAGGCCAACAGCCGTATTCTGATCGTCGGCCCTTCGGGCAGCGGCAAGGAGCTGACCGCGCGCACGCTGCACAACATGTCGAACCGCGCGTCGGGTCCGTTCGTCGTTATCAACGCGGCCGCGATCACGCCGGAGCGCATGGAGGTCGAGCTGTTCGGCGTCGAACTGTCGGACGGGGAGAGCCAGCGCAAGGCCGGTGCGCTGGAGGAGGCGCATGGCGGCACGCTGTTCATCGACGAAATCGCCGACATGCCGCGCGAGACCCAGAACAAGATCCTGCGTGTGCTGGTCGATCAGACCTTCCAGCGCGCCGGCGGCACCACCAAGGTCAGCGTCGATGTCCGCATCATCTCCTCGACCTCGCGCAATCTGGAAACCGAGATCGCCGAGGGGCGCTTCCGCGAAGATCTCTATCACCGCCTGTCGGTGGTGCCGATCCGGGTGCCGCCGCTGTCCGAGCGACGCGAGGACATTCCCGAGCTGGTCGATTATTTCATGGAGCAGATTTCCGCCTCGACCGGCCTGCCGAGGCGCAAGATCGGTGACGACGCCATGGCGGTGCTGCAATCGCATGTCTGGCCGGGCAACATCCGCCAGCTTCGCAACAACGTCGAGCGCGTCATGATTCTGGCCGGCGGCGAGCCGGAAGCGATCATCACCGCCGACATGCTGCCACAGGATGTCGGCTCGATGATCCCGGCGATGCCGACCGGCGTCAATGGCGAGCACATCATGGGGCTACCGCTGCGCGAGGCGCGCGAAGTGTTCGAGCGCGATTATCTGATCGCGCAGATCAGCCGTTTCTCCGGCAACATCTCGCGCACCGCCGAATTCGTCGGCATGGAGCGCTCGGCGCTTCACCGCAAACTCAAGGCGCTCGGCGTGGGGTAG
PROTEIN sequence
Length: 457
MANDILIVDDEADIRDLVAGILDDEGFKTRTARDSDSALAEVSSRRPSLIFLDIWMQGSKLDGLQLLEQIKKDFPDVPVVMISGHGNIETAVAAIKRGAYDFIEKPFKADRLVLVAERALETSRLKREVRELKHLAPSAGNLIGRSPCVNQLRQTIDRAAKANSRILIVGPSGSGKELTARTLHNMSNRASGPFVVINAAAITPERMEVELFGVELSDGESQRKAGALEEAHGGTLFIDEIADMPRETQNKILRVLVDQTFQRAGGTTKVSVDVRIISSTSRNLETEIAEGRFREDLYHRLSVVPIRVPPLSERREDIPELVDYFMEQISASTGLPRRKIGDDAMAVLQSHVWPGNIRQLRNNVERVMILAGGEPEAIITADMLPQDVGSMIPAMPTGVNGEHIMGLPLREAREVFERDYLIAQISRFSGNISRTAEFVGMERSALHRKLKALGVG*