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SCNpilot_expt_500_p_scaffold_40545_2

Organism: SCNPILOT_EXPT_1000_BF_Afipia_63_13

partial RP 36 / 55 MC: 1 BSCG 36 / 51 MC: 4 ASCG 10 / 38
Location: comp(180..911)

Top 3 Functional Annotations

Value Algorithm Source
rrmJ; ribosomal RNA large subunit methyltransferase J (EC:2.1.1.-); K06442 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] similarity KEGG
DB: KEGG
  • Identity: 79.8
  • Coverage: 243.0
  • Bit_score: 386
  • Evalue 4.80e-105
  • rbh
hemolysin n=1 Tax=Afipia birgiae RepID=UPI00031374DC similarity UNIREF
DB: UNIREF100
  • Identity: 83.1
  • Coverage: 243.0
  • Bit_score: 405
  • Evalue 3.20e-110
  • rbh
Hemolysin TlyA family protein {ECO:0000313|EMBL:EKS41306.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 83.1
  • Coverage: 243.0
  • Bit_score: 403
  • Evalue 2.20e-109

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Taxonomy

Afipia broomeae → Afipia → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 732
ATGACCACAAAGCAGCGCGCAGATACCCTTCTTGTCGAACGCGGCCTGTTCGAGAGCCGCGCCCGCGCGCAGGCCGCGATCGAGGCCGGCGGCGTGTTCGCCGATGGCGAGCCGGTCACCAAGCCCTCCGCGATGCTGGCGCGCGATGCCACGATCGAAGCCGAACCCGCGCATCCCTGGGTGTCGCGCGGCGGCGTCAAGCTAGCGGCGGCGCTGGAGCATTATCCCGTCGAGATCGAGGATCACGTCTGCGTCGATGTCGGTGCCTCCACCGGCGGCTTCACCGAGGTGCTGCTGGCGAACGGCGCGAGCCTGGTCTACGCCATCGATGTCGGCACCCGGCAACTGCATCCGAGTCTGCACGGCAATCCGAAGATCGTGTCGATGGAGAACACCGACATCCGCTCGCTGGCCGGCAAGCGGCTGGAAATCCGGCCCGACATCGTGGTGATCGATGTCAGCTTCATCTCGCTGAAGCTGGTGTTGCCCGCCGTGCTGCCGCTGGCCGCCGCACCGATGCATCTGCTGGCGCTGATCAAGCCGCAATTCGAAGCCGACCGCAAACATTCCAAGAAGGGCATCATCCGCGACGAGGCCGTGCACCGCGCGGTATGCGACGATATCGCCGCCTTCGCCGCTTCGCTCGGCTGCAGCGAGATCGAGGTATTTCCCTCGGCGATTCCCGGCGGCGACGGCAACCGCGAATTCTTCCTCGGCGCGCAGCGCGGCTGA
PROTEIN sequence
Length: 244
MTTKQRADTLLVERGLFESRARAQAAIEAGGVFADGEPVTKPSAMLARDATIEAEPAHPWVSRGGVKLAAALEHYPVEIEDHVCVDVGASTGGFTEVLLANGASLVYAIDVGTRQLHPSLHGNPKIVSMENTDIRSLAGKRLEIRPDIVVIDVSFISLKLVLPAVLPLAAAPMHLLALIKPQFEADRKHSKKGIIRDEAVHRAVCDDIAAFAASLGCSEIEVFPSAIPGGDGNREFFLGAQRG*