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SCNpilot_expt_500_p_scaffold_21606_3

Organism: SCNPILOT_CONT_300_BF_Burkholderiales_67_33

partial RP 20 / 55 MC: 2 BSCG 23 / 51 MC: 1 ASCG 5 / 38
Location: comp(995..1231)

Top 3 Functional Annotations

Value Algorithm Source
Cold-shock protein n=3 Tax=Bordetella holmesii RepID=M5NVN9_9BORD similarity UNIREF
DB: UNIREF100
  • Identity: 81.7
  • Coverage: 71.0
  • Bit_score: 127
  • Evalue 5.40e-27
cspD; cold shock-like protein; K03704 cold shock protein (beta-ribbon, CspA family) similarity KEGG
DB: KEGG
  • Identity: 81.7
  • Coverage: 71.0
  • Bit_score: 127
  • Evalue 1.70e-27
'Cold-shock' DNA-binding domain protein {ECO:0000313|EMBL:AHV93417.1}; TaxID=1247649 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella holmesii ATCC 51541.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 81.7
  • Coverage: 71.0
  • Bit_score: 127
  • Evalue 7.60e-27

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Taxonomy

Bordetella holmesii → Bordetella → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 237
ATGTCCAGCGATATCAACGAAGGCAAGAGGGGTAGCGGCACCGTCAAATGGTTCAATGACGCCAAGGGCTTCGGGTTCATCACGCCCGACGATGGCGGCGACGACCTGTTCGCCCATTTCTCCTCCATCCAGATGAACGGCTTCAAGACCCTGAAAGAAGGCCAGAAGGTCACCTTCGAGGCCGCCCAAGGCCCCAAGGGCAAGCAGGCGCTGAACATCAGCGAGGCGGCGGCCTGA
PROTEIN sequence
Length: 79
MSSDINEGKRGSGTVKWFNDAKGFGFITPDDGGDDLFAHFSSIQMNGFKTLKEGQKVTFEAAQGPKGKQALNISEAAA*