ggKbase home page

SCNpilot_expt_500_p_scaffold_27575_2

Organism: SCNPILOT_CONT_300_BF_Burkholderiales_67_33

partial RP 20 / 55 MC: 2 BSCG 23 / 51 MC: 1 ASCG 5 / 38
Location: 1256..1921

Top 3 Functional Annotations

Value Algorithm Source
Probable DNA repair protein PMI12_01114 n=1 Tax=Variovorax sp. CF313 RepID=J3CUD6_9BURK similarity UNIREF
DB: UNIREF100
  • Identity: 72.4
  • Coverage: 221.0
  • Bit_score: 340
  • Evalue 1.10e-90
Non-homologous end joining protein Ku {ECO:0000256|HAMAP-Rule:MF_01875}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 74.2
  • Coverage: 221.0
  • Bit_score: 349
  • Evalue 2.70e-93
ku protein; K10979 DNA end-binding protein Ku similarity KEGG
DB: KEGG
  • Identity: 71.9
  • Coverage: 221.0
  • Bit_score: 339
  • Evalue 8.00e-91

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 666
ATGGCCTCCACGGCACGCACACTCTGGAAAGGCGCCATCAGTTTCGGCCTGGTTCACATTCCGGTGGCGCTGTACACCGCCACCCAGGAAAACGAACTGGACTTCGACTGGCTGGACAAGCGCAGCATGGACCCGGTGGGCTACAAACGCGTCAACAAGCGCACCGGCCGCGAGATCGCGCGCGAGAACATCGTCAAGGGCATCGCCTATGAAGACGGCCGCTACGTCGTGCTGTCCGACGACGAGATACGCGCCGCCTATCCCGAATCGACGCAAACCATAGAGATCGAGACCTTCGTCGCGGCCGACGCCATTCCGTTCGTCTATCTCGAACGCCCCTATTACCTGGCGCCCCTGGGCAAAGGCGCCAAGGTCTACGCGCTGCTGCGCGAGGCGCTGTTCAAGACCGGGCGGATAGGCGTGGCGCGCGTGGTCATCCAGACCAAGCAGCACCTGGCCGCGCTGATTCCCGCCGGGCCCGGCCTGGTCCTGAACCTGCTGCGCTGGGGCGACGAAATCCGTTCGTGGGAGAACCTCGACCTGCCCGAGGAAGGCAGCCACGCCGAAGGTATCTCGGCGCGCGAAATGAAGATGGCCGTCCAGTTGATCGAAGACATGGCGGGCGACTGGGATCCCCGGCAGTTCCACGACGAGTTCAAGGAAAAG
PROTEIN sequence
Length: 222
MASTARTLWKGAISFGLVHIPVALYTATQENELDFDWLDKRSMDPVGYKRVNKRTGREIARENIVKGIAYEDGRYVVLSDDEIRAAYPESTQTIEIETFVAADAIPFVYLERPYYLAPLGKGAKVYALLREALFKTGRIGVARVVIQTKQHLAALIPAGPGLVLNLLRWGDEIRSWENLDLPEEGSHAEGISAREMKMAVQLIEDMAGDWDPRQFHDEFKEK