ggKbase home page

SCNpilot_expt_500_p_scaffold_44689_1

Organism: SCNPILOT_CONT_300_BF_Burkholderiales_67_33

partial RP 20 / 55 MC: 2 BSCG 23 / 51 MC: 1 ASCG 5 / 38
Location: comp(3..467)

Top 3 Functional Annotations

Value Algorithm Source
glcD1; glycolate oxidase subunit; K00104 glycolate oxidase [EC:1.1.3.15] similarity KEGG
DB: KEGG
  • Identity: 73.8
  • Coverage: 149.0
  • Bit_score: 221
  • Evalue 1.70e-55
Glycolate oxidase subunit n=1 Tax=Bordetella avium (strain 197N) RepID=Q2KZ61_BORA1 similarity UNIREF
DB: UNIREF100
  • Identity: 73.8
  • Coverage: 149.0
  • Bit_score: 221
  • Evalue 5.40e-55
Glycolate oxidase subunit GlcD {ECO:0000313|EMBL:KIF81216.1}; TaxID=709839 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. TSA66.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 70.3
  • Coverage: 155.0
  • Bit_score: 223
  • Evalue 1.50e-55

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Herbaspirillum sp. TSA66 → Herbaspirillum → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 465
ATGAACGCCCCAACAGAAATCGGGCTGGACCCGATCGCGACCGAGCGCCAGGTAGAGGTGGTGCAGGCATTGCGCGATGTGCTTCCCAACTACTGTGTGCTGTTCAGGGAAGAGGACACGCGTCCCTACGAGTGCGACGGCCTGTCGCTGTTCCGCCAGGTGCCCATGGTCGTGGTGCTGCCGGAAACCGAGGAGCAGGTGCGGCGGGTCCTGCGGTTGTGCAAGCGGATGGGCGTGCCGGTGGTGGCGCGCGGCGCGGGTACCGGTTTGTCGGGCGGGGCGACGCCGCATGCCGAGGGCGTGCTGCTGGGCCTGGCGAAGTTCAACCGCATCATCCAGGTCGATCCCGAGGCGCGCCAGGCTGTGGTGCAGCCGGGCGTGCGCAACCTGGCCATCTCCGAGGCCGCCGCGCCCCACGGGCTGTACTACGCGCCCGATCCCTCCAGCCAGATCGCCTGCACCATA
PROTEIN sequence
Length: 155
MNAPTEIGLDPIATERQVEVVQALRDVLPNYCVLFREEDTRPYECDGLSLFRQVPMVVVLPETEEQVRRVLRLCKRMGVPVVARGAGTGLSGGATPHAEGVLLGLAKFNRIIQVDPEARQAVVQPGVRNLAISEAAAPHGLYYAPDPSSQIACTI