ggKbase home page

SCNpilot_expt_500_p_scaffold_29585_1

Organism: SCNPILOT_CONT_500_P_Rhizobiales_62_14

partial RP 15 / 55 MC: 1 BSCG 15 / 51 ASCG 6 / 38
Location: 3..560

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma 70 n=1 Tax=Bradyrhizobium elkanii RepID=UPI0003710FF7 similarity UNIREF
DB: UNIREF100
  • Identity: 60.3
  • Coverage: 184.0
  • Bit_score: 220
  • Evalue 1.10e-54
RNA polymerase sigma 70 {ECO:0000313|EMBL:KJC47145.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 62.5
  • Coverage: 184.0
  • Bit_score: 228
  • Evalue 5.70e-57
RNA polymerase sigma factor protein; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 60.0
  • Coverage: 185.0
  • Bit_score: 209
  • Evalue 8.10e-52

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Bradyrhizobium sp. LTSP885 → Bradyrhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 558
TCGGTCGGCCTCGCGCTGCTGGTGGTGTTGCAGACGCTGGCGCCGGCCGAGCGCATCGCCTTCGTGTTGCATGACATGTTCGATCTGCCGTTCGACGATATCGCGCCGATTGTCGGCCGTTCGCCGACGGCGGCCCGACAACTGGCCAGCCGCGCGCGGCGGCGGGTGCAGGGCAAGGCTGTGCGGCCCGATGCCGACATCGCCGGCCAGCGGGGTGTCGTTGACGCTTTTCTTGCTGCGGCGCGTGGCGGCGATATGGAGGGTCTGCTTGCGGCGCTCGACCCGGATGTCGTGGTGCGCGCCGACGCGGTGGCGAGACAGGCGGGCGCGAAGGAGGAAGTCCACGGTGCGCAGCGCGTGGCGCAGTTCTATCTCGGCAAGGCGCAGCAAGCGCGTCCGGCGCTGGTCGATGGTCGCGTTGGCATCGTCGTGGCGCCGCGCGGGCGGTTGGCGCTGGTGCTGAAGCTGAGCTTCGCGAACGAGCGCATTACGGGCATCGACCTCATCGCCGATCCCGCACAGCTGCAGCGGTTCGACCTTGCGACGCTCGAGAGCTGA
PROTEIN sequence
Length: 186
SVGLALLVVLQTLAPAERIAFVLHDMFDLPFDDIAPIVGRSPTAARQLASRARRRVQGKAVRPDADIAGQRGVVDAFLAAARGGDMEGLLAALDPDVVVRADAVARQAGAKEEVHGAQRVAQFYLGKAQQARPALVDGRVGIVVAPRGRLALVLKLSFANERITGIDLIADPAQLQRFDLATLES*