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SCNpilot_expt_500_p_scaffold_40319_1

Organism: SCNPILOT_CONT_500_P_Rhizobiales_62_14

partial RP 15 / 55 MC: 1 BSCG 15 / 51 ASCG 6 / 38
Location: comp(3..1355)

Top 3 Functional Annotations

Value Algorithm Source
transcription-repair coupling factor; K03723 transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-] similarity KEGG
DB: KEGG
  • Identity: 90.2
  • Coverage: 451.0
  • Bit_score: 808
  • Evalue 1.20e-231
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 90.2
  • Coverage: 451.0
  • Bit_score: 808
  • Evalue 5.50e-231
Transcription-repair-coupling factor n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QLP6_NITHX similarity UNIREF
DB: UNIREF100
  • Identity: 90.2
  • Coverage: 451.0
  • Bit_score: 808
  • Evalue 3.90e-231

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Taxonomy

Nitrobacter hamburgensis → Nitrobacter → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1353
GCGGGTGCGCGGCAGGGCCGCAACTTCGCGCCGGAGCGCGCGGACAGTTCGGTCAACGTCTTCGAATCCGTCGTGGCGCATGTGCAGAGCATGCAGGCAGCGCGCAAGAAAGTCGTGGTTGCGCTGTGGAGCGAAGGCTCGCGCGACCGCATGGCGAGCATGCTCAAGGACCACAAGCTGCTCAATCTCACCAGCGTCAATACCTGGCGTACGGTGCAGGCGACGCCACGCAACGAGACCATGCTTGCGGTGGTCGGCATGGAGTCGGGCTTTGAGACCGACAACGTCGTCTTCATCACAGAGCAGGATATCCTCGGCGATCGTCTTGTGCGGCCTCGCAAGGCTAGCCGCAAGCTGGAGAATTTCATCTCCGAGGTCACCAGCCTGGCGACCGGCGACATCGTGGTGCATGTCGAGCACGGCATTGGCCGCTTTGTCGGCCTGCAGACGCTCGATGTTGCCGGCGCGCCGCACGACTGTCTCGAACTGCGCTACGCCAACGAGACCAAGCTGTTCCTGCCGGTCGAAAACATCGAACTGCTATCGCGCTATGGTTCCGACCAAACCGGCGTCGAACTCGACAAGCTTGGCGGCGGAGGCTGGCAGGCGCGCAAGGCCAAGCTGAAGAACCGCATCCGCGAAATCGCCGGTGAACTCATCAAGATCGCTGCGGAACGGCATCTGCATGAGGCGCCGAAGATGCCGGTGCAGCCCGGACTCTACGATGAGTTCTGCGCGCGCTTCCCGTACGAGGAAACCGAGGATCAACTCGCGGCGATCAATGCGACTCTGCATGATCTCGAAAGCGGCAAGCCGATGGATCGTCTGGTCTGCGGCGACGTCGGATTCGGCAAGACCGAGGTCGCGTTGCGCGCGACATTCGCGGTGGCGCTGGACGGCAAGCAGGTCGCCGTCGTCGTTCCGACCACGCTGCTGGCGCGGCAACATGCGCGGACCTTTACCGAGCGTTTCCGCGGTCTCCCTGTCAATGTTGCGCAGGCGTCCCGGCTGGTCTCCGCGAAGGAGTTGAGCCAGACCAAGAAGGGCATTGCCGATGGTTCGGTCGATATCGTCGTAGGCACCCATGCGCTGCTCGGCAAGTCGATCAAATTCAAGGATCTTGGGCTGATCGTCGTCGACGAGGAGCAGCATTTCGGTGTCACCCACAAGGAGCGGCTGAAGCAGTTGCGTGCCGAGGTGCATGTGCTCACCCTGAGCGCGACGCCGATCCCGCGCACGCTGCAGCTGGCGCTGACCGGTGTTCGCGATTTGTCGATCATTGCATCGCCTCCGGTCGATCGCCTCGCGGTGCGAACCTTCGTCGCGCCGCACGATCCGCTGATGATCCGCGAA
PROTEIN sequence
Length: 451
AGARQGRNFAPERADSSVNVFESVVAHVQSMQAARKKVVVALWSEGSRDRMASMLKDHKLLNLTSVNTWRTVQATPRNETMLAVVGMESGFETDNVVFITEQDILGDRLVRPRKASRKLENFISEVTSLATGDIVVHVEHGIGRFVGLQTLDVAGAPHDCLELRYANETKLFLPVENIELLSRYGSDQTGVELDKLGGGGWQARKAKLKNRIREIAGELIKIAAERHLHEAPKMPVQPGLYDEFCARFPYEETEDQLAAINATLHDLESGKPMDRLVCGDVGFGKTEVALRATFAVALDGKQVAVVVPTTLLARQHARTFTERFRGLPVNVAQASRLVSAKELSQTKKGIADGSVDIVVGTHALLGKSIKFKDLGLIVVDEEQHFGVTHKERLKQLRAEVHVLTLSATPIPRTLQLALTGVRDLSIIASPPVDRLAVRTFVAPHDPLMIRE