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SCNpilot_expt_500_p_scaffold_43273_3

Organism: SCNPILOT_CONT_500_P_Rhizobiales_62_14

partial RP 15 / 55 MC: 1 BSCG 15 / 51 ASCG 6 / 38
Location: comp(1169..1273)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Rhodopseudomonas palustris RepID=B3QDA5_RHOPT similarity UNIREF
DB: UNIREF100
  • Identity: 91.2
  • Coverage: 34.0
  • Bit_score: 63
  • Evalue 4.30e-08
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 91.2
  • Coverage: 34.0
  • Bit_score: 63
  • Evalue 1.30e-08
RNA polymerase ECF-type sigma factor {ECO:0000313|EMBL:CAE30232.1}; TaxID=258594 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 91.2
  • Coverage: 34.0
  • Bit_score: 63
  • Evalue 6.00e-08

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Taxonomy

Rhodopseudomonas palustris → Rhodopseudomonas → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 105
ATCATCGGCATTCCGCAGAGCACGGTGAAGACCCGGATGTTCTATGCCCGCAAGCAACTAGCCGAGCTGCTCAAGCGCGCCGGCGTCGAAAGCATGGCGGCCTGA
PROTEIN sequence
Length: 35
IIGIPQSTVKTRMFYARKQLAELLKRAGVESMAA*