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SCNpilot_expt_500_p_scaffold_54376_1

Organism: SCNPILOT_CONT_300_BF_Sphingomonadales_67_36

partial RP 0 / 55 BSCG 1 / 51 ASCG 0 / 38
Location: 3..1046

Top 3 Functional Annotations

Value Algorithm Source
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 83.2
  • Coverage: 352.0
  • Bit_score: 591
  • Evalue 8.20e-166
Transcription-repair-coupling factor n=1 Tax=Sphingomonas sp. S17 RepID=F3WVK5_9SPHN similarity UNIREF
DB: UNIREF100
  • Identity: 83.2
  • Coverage: 352.0
  • Bit_score: 591
  • Evalue 5.90e-166
transcription-repair coupling factor similarity KEGG
DB: KEGG
  • Identity: 72.5
  • Coverage: 349.0
  • Bit_score: 512
  • Evalue 8.30e-143

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Taxonomy

Sphingomonas paucimobilis → Sphingomonas → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1044
TATGAGAACCGCAAGCGCGCGGAGGCCGCCCAGCCCGGCAGCTATCGCGCGCTGCCCGCGAAGACGCTCTACCTCGACGACGGCGAATGGCGCGCAGCGCTGGAGGCGGCGACGGCACATGTCACCACGTCGTTCCACGAGCCCGAATCCGCTCGCGTGGTGGATTTCGGCGTGGACGGCGCGCGTGATTTCGCGCCCGAACGCGCATCGGGCGCGAACGTCTATGAGGCGGTCGTCGCGCATGTCGCGAAGCTGCGCAAGGACGGTCGCAAGCCGGTGCTGGCGAGCTATTCCGGCGGCGCGCGCGACCGGCTCGGCAATCTGCTCAAGGACCACGGCCTGAACGGCGCGAAGCCGGTCGATACGTGGCAGGAGGCGCTCGGCGTCGGCGAGACGCAGGTCGCGCTGATCGTCCTGCCGCTCGATCACGGTTTCACCGCGCCGCGCGTCGCGGTGCTGACCGAGCAGGACATGCTGGGCGACCGGCTCGTCCGCCGGCAGAAGCGCCGCAAGTCCGCCGACGCCTTCCTCGCGGAACTGGCAACGCTCTCGCCGGGCGATCTGGTCGTCCATGTCGATCACGGCATCGGGCGCTACGAGGGACTGACCTCGATCCCCGTCGGCAACGCCCCGCACGATTGCGTCGCGCTGACCTATGCCGGGGGCGACAAGCTCTACGTTCCGGTCGAGAATCTCGAAGTCCTCTCGCGCTACGGCTCCAGCGAGGAAGGCGCGGCGCTCGACAAGCTCGGCGGTGAAGCGTGGCAGCGGCGCAAGTCGCGCATGAAGGAGCGCATCCGCGAGATCGCCGGCGAGTTGATCGCGGTCGCCGCCGAGCGCGCGCTGCGCTCGGGCGAGGTGGCGGAGCCGGATGCGAGCGGCTTCCCGACCTTCGTCGATCGTTTCCCTTATGAGGAAACCGACGATCAGGATCGCGCGATCGAGGATGTGCTGGGCGACCTCTCCGCCGGCAAGCCAATGGACCGGCTGATCGTCGGCGACGTGGGCTTCGGCAAGACGGAGGTCGCGCTGCGCGCCGCCTTC
PROTEIN sequence
Length: 348
YENRKRAEAAQPGSYRALPAKTLYLDDGEWRAALEAATAHVTTSFHEPESARVVDFGVDGARDFAPERASGANVYEAVVAHVAKLRKDGRKPVLASYSGGARDRLGNLLKDHGLNGAKPVDTWQEALGVGETQVALIVLPLDHGFTAPRVAVLTEQDMLGDRLVRRQKRRKSADAFLAELATLSPGDLVVHVDHGIGRYEGLTSIPVGNAPHDCVALTYAGGDKLYVPVENLEVLSRYGSSEEGAALDKLGGEAWQRRKSRMKERIREIAGELIAVAAERALRSGEVAEPDASGFPTFVDRFPYEETDDQDRAIEDVLGDLSAGKPMDRLIVGDVGFGKTEVALRAAF