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SCNpilot_expt_500_p_scaffold_30690_2

Organism: SCNPILOT_EXPT_750_BF_Myxococcales_68_20

partial RP 2 / 55 BSCG 3 / 51 ASCG 1 / 38
Location: comp(248..811)

Top 3 Functional Annotations

Value Algorithm Source
ECF-family RNA polymerase sigma factor n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9GQ03_SORC5 similarity UNIREF
DB: UNIREF100
  • Identity: 48.7
  • Coverage: 158.0
  • Bit_score: 159
  • Evalue 4.00e-36
ECF family RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 48.7
  • Coverage: 158.0
  • Bit_score: 159
  • Evalue 1.30e-36
ECF-family RNA polymerase sigma factor {ECO:0000313|EMBL:CAN96828.1}; TaxID=448385 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain; So ce56)).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 48.7
  • Coverage: 158.0
  • Bit_score: 159
  • Evalue 5.60e-36

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Taxonomy

Sorangium cellulosum → Sorangium → Myxococcales → Deltaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 564
GTGACACGGGGCACGCTCTCTTCTCTAGACGCTCCGGCGTTGCTCTCGTTGGATAGCTCCATCGACGTCGCCACGGTCTTTCGCGAGCACGGCGCCTTCGTTCACCGCATCCTACGGCGGCTCGGGGTCCACCCCGCGGACGTCGATGACGCGCTCCAGGAGGTGTTCGTCGTCGTCCACAGGCGCCTGCCCGAGTTCGACCGCGACGCGTCGATGCGGCCGTGGGTTTACGGCATCAGCGTGCGCGTGGCGAGCCGCGCGCGCCGGCGGAGGTGGTCGTCCCGCGAGGTCGGCGCCGAAGAGGCTCCGGAGCCGATCGATCCGACGACGCCGATGGACAGCGTCGCCGCGAAACAGGCGAGTGAGGTGCTCAGCGTGATCTTGGATCAGATCGACGATGAAAAACGCGCCGTCTACGTGCTCCACGAGCTCGAGGAGCTCTCCGTCCCCGAGGTCGCGAAGGTCCTCGGTTGTCCAGTTCAGACCGCGTACTCGCGTCTCCGCGCGGCGCAGGTCGCGGTCGCCGACGCGGTGCGCAGGTACCGCATGCGGGAGGGAATCTAG
PROTEIN sequence
Length: 188
VTRGTLSSLDAPALLSLDSSIDVATVFREHGAFVHRILRRLGVHPADVDDALQEVFVVVHRRLPEFDRDASMRPWVYGISVRVASRARRRRWSSREVGAEEAPEPIDPTTPMDSVAAKQASEVLSVILDQIDDEKRAVYVLHELEELSVPEVAKVLGCPVQTAYSRLRAAQVAVADAVRRYRMREGI*