ggKbase home page

SCNpilot_expt_1000_bf_scaffold_2597_9

Organism: SCNPILOT_EXPT_1000_BF_Shinella_65_6

near complete RP 43 / 55 MC: 6 BSCG 46 / 51 MC: 8 ASCG 10 / 38 MC: 3
Location: comp(10085..10528)

Top 3 Functional Annotations

Value Algorithm Source
Putative transcriptional regulator, AsnC/Lrp family n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CIV5_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 91.1
  • Coverage: 146.0
  • Bit_score: 269
  • Evalue 2.20e-69
Putative transcriptional regulator, AsnC/Lrp family {ECO:0000313|EMBL:EYR82117.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 91.1
  • Coverage: 146.0
  • Bit_score: 269
  • Evalue 3.00e-69
transcription regulator, AsnC family, Lrp-like similarity KEGG
DB: KEGG
  • Identity: 72.1
  • Coverage: 147.0
  • Bit_score: 224
  • Evalue 1.90e-56

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 444
ATGGACGAACTGGACGAGAAGGACAGGCTGCTGCTTGCCGCGCTGCGCGCCGATGCCCGCCAGAGCCTCGTGGAACTGGCGCGCCGCGCCGGGCTTTCCCGCAGCGCGGTGCATGAGCGCATCCGTCGGCTGGAGGCGAGGGGCGTGATCGCCGGCTATACGGTGAAGCTCGGCATCGACCGCGTGCGGCCGGGCGTCGAGGCGCTGGTCGCCATCGGTTTCCAGCAGGGGCGCAACTGCGATCACATCGTGCCGCACCTGGCCGGTATTCCCGAGGTCGTGACCTGCTGGTCGCTCGCCGGGCCGACCGACCTGATGCTGCTCGTCGAATGCGCGTCCAACGCCGCGCTCGACACGGTGCGCCGCCAGATCGCGACGACGCCGGGCATCGCGACCGTGCAGACGCACGTTTCGCTGCGCACCCATTTCGACCGTCGCGGCTAG
PROTEIN sequence
Length: 148
MDELDEKDRLLLAALRADARQSLVELARRAGLSRSAVHERIRRLEARGVIAGYTVKLGIDRVRPGVEALVAIGFQQGRNCDHIVPHLAGIPEVVTCWSLAGPTDLMLLVECASNAALDTVRRQIATTPGIATVQTHVSLRTHFDRRG*