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SCNpilot_expt_1000_bf_scaffold_3360_5

Organism: SCNPILOT_EXPT_1000_BF_Shinella_65_6

near complete RP 43 / 55 MC: 6 BSCG 46 / 51 MC: 8 ASCG 10 / 38 MC: 3
Location: comp(5627..5941)

Top 3 Functional Annotations

Value Algorithm Source
Exopolysaccharide production repressor protein ExoX n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3X264_RHIFR similarity UNIREF
DB: UNIREF100
  • Identity: 53.3
  • Coverage: 92.0
  • Bit_score: 85
  • Evalue 4.10e-14
Exopolysaccharide production repressor {ECO:0000313|EMBL:EYR81978.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 70.4
  • Coverage: 108.0
  • Bit_score: 154
  • Evalue 1.00e-34
exoX; exopolysaccharide production repressor protein ExoX similarity KEGG
DB: KEGG
  • Identity: 53.3
  • Coverage: 92.0
  • Bit_score: 85
  • Evalue 1.30e-14

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 315
ATGAAACGCGCGCCGGAAACGAAATGGCGGGACAGCACGGCCTATGCGCCGCGCTTCTTCCTGAGCATGGGCATCGCGCTCGTGGCCTTTGCCGCGGTCACCTATGTCAGCACGGGCTCCATCGCCACGACGGCGCGGCGCACCTTCCTCTGCGCGATCCTCATCCAGGTCGGCTATTTCCTCGCCACGCTCTATCTCGTCTGGCGCACCGCCAAGGCACGCCGGGCCGCGACGGGCACGGCACGGCCGGACCTCGAAAAGGCCAAACCCCAGGTCTCCGTCCCGATGAACGAGCCCGGCCACTCCAAGCCCTGA
PROTEIN sequence
Length: 105
MKRAPETKWRDSTAYAPRFFLSMGIALVAFAAVTYVSTGSIATTARRTFLCAILIQVGYFLATLYLVWRTAKARRAATGTARPDLEKAKPQVSVPMNEPGHSKP*