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SCNpilot_expt_1000_bf_scaffold_6023_2

Organism: SCNPILOT_EXPT_1000_BF_Shinella_65_6

near complete RP 43 / 55 MC: 6 BSCG 46 / 51 MC: 8 ASCG 10 / 38 MC: 3
Location: 1219..2409

Top 3 Functional Annotations

Value Algorithm Source
Putative transmembrane protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EY96_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 85.9
  • Coverage: 396.0
  • Bit_score: 669
  • Evalue 1.90e-189
  • rbh
Putative transmembrane protein {ECO:0000313|EMBL:EYR80680.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 85.9
  • Coverage: 396.0
  • Bit_score: 669
  • Evalue 2.70e-189
transmembrane protein similarity KEGG
DB: KEGG
  • Identity: 62.7
  • Coverage: 397.0
  • Bit_score: 506
  • Evalue 6.80e-141
  • rbh

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1191
ATGATGCGCACCTCCCACTTCCGCGCCCTCCTCGCCGGCGCAGCGCTTGCCACACTGGCAAGCCCCGCCTTCGCACTCGACGGCGCGGACCTGCTGGCCAAGCTGAACGCAACCTATGCGACCAGCGGCGTATCCATCAGCTCTTCGAACGTTACCGCCGACGGCTCCACCGTGACGCTGGAAGGCGCGCAGATGAAGGCGACCGGCAGCGAAGCGCCGCTCAAGCTCGGCACCATCACCATGGAGGGCGTCGAGGAAGCCGGCGACGGCGGCAACACCGTCGAGACCGTTTCCTTCGAGGACATCAACGTTACCGAGGCAGAGACGACGGTGACGGCGAAGGACCTTTCGATCAGCGGCGTTTCCATTCCCGGCAAGGTCGTTCCCGGCACGCTCGAATCGCTGCTGATGTACGAATCGGCATCCGCCGGCCCGGTCAGCGTCGCCGCCAAGGGCAAGGAAGTCTTCTCCATGTCCGGCATGGAAGCGAACGTCACCCGCATGGACGACGATGCCGGCCTCGAATTCGACGCGACGATGTCCGACCTCAAGGCGGACCTGACGAGCGTCGAGGACCCCAAGACAAAGGAAGCGCTCGACAAGATCGGCCTGCATGCGCTGGAAGGCAAGGTCAGCATGTCCGGCAGCTGGGAGCTGGCGAGCGGCAAGCTGGCCGTCGACGAATATGCCTTCGACTTCAAGGATGTCGGCCGCCTCAACCTCTCGCTCGCCTTCTCCGGCTACACGCTCGACTTCCTGAAGAACATGCAGGAAGCCCTGAAGACGGCCGAAGCCAACCCGAACAAGGAAGAGGCGAACGCCGCCATGGGCATGGCCATGATGGGCCTCGTCCAGCAGCTCACCTTCGACAATGCCTCGATCTCCTTCGAGGACGCCTCGATCACCAAGAAGCTGCTCGACTATGCCGGCAGCGAACAGGGCGTGACGGGCGACCAGATGGCGCAGTCGCTGAAGGGCCTCGTCCCGATCATGATCGCGCAGCTCAACATGCCCGACCTGCAGAACCAGATCTCGGCCGCCGTCAACACCTATCTCGACGACCCGAAGAGCCTGACGATCAGCGCCGAGCCGAAGGAGCCGGTGCCGTTCCCGATGATCATGGGCGCCGCCATGGGCGCGCCGCAGACCATCCCGCAGGTTCTTGGCGTCACCGTCACCGCCAACCAGTAA
PROTEIN sequence
Length: 397
MMRTSHFRALLAGAALATLASPAFALDGADLLAKLNATYATSGVSISSSNVTADGSTVTLEGAQMKATGSEAPLKLGTITMEGVEEAGDGGNTVETVSFEDINVTEAETTVTAKDLSISGVSIPGKVVPGTLESLLMYESASAGPVSVAAKGKEVFSMSGMEANVTRMDDDAGLEFDATMSDLKADLTSVEDPKTKEALDKIGLHALEGKVSMSGSWELASGKLAVDEYAFDFKDVGRLNLSLAFSGYTLDFLKNMQEALKTAEANPNKEEANAAMGMAMMGLVQQLTFDNASISFEDASITKKLLDYAGSEQGVTGDQMAQSLKGLVPIMIAQLNMPDLQNQISAAVNTYLDDPKSLTISAEPKEPVPFPMIMGAAMGAPQTIPQVLGVTVTANQ*