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SCNpilot_expt_1000_bf_scaffold_8806_19

Organism: SCNPILOT_EXPT_1000_BF_Shinella_65_6

near complete RP 43 / 55 MC: 6 BSCG 46 / 51 MC: 8 ASCG 10 / 38 MC: 3
Location: 13674..13937

Top 3 Functional Annotations

Value Algorithm Source
pleD4; response regulator PleD (EC:2.7.7.65) similarity KEGG
DB: KEGG
  • Identity: 40.9
  • Coverage: 88.0
  • Bit_score: 72
  • Evalue 5.60e-11
Response regulator PleD n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3XAA4_RHIFR similarity UNIREF
DB: UNIREF100
  • Identity: 40.9
  • Coverage: 88.0
  • Bit_score: 72
  • Evalue 1.80e-10
Diguanylate cyclase {ECO:0000313|EMBL:EYR77821.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 83.0
  • Coverage: 88.0
  • Bit_score: 144
  • Evalue 5.10e-32

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 264
GTGCTCGACTATGTCGTCAAGGACAGCCCGGCGGCGATGCAGCAGCTCGTGCTGGCCGTCGACCGCATCCTGACGAGCGGCAAGACGCAGGTGCTGGTCGTCGATTCGGACCCGGAAAGCCTCCAGCAGCAACTGGGCCTGATCGCCAAGCAGCGCTTCCAGATCGTCGCCGTAGAAAACGGCACCGCGGCGCTGGAAGTCCTGGATTCCCATGGCGGGATCGACATGGTGGTGACGGACCTCGATCTTGCCGACATGGACGGC
PROTEIN sequence
Length: 88
VLDYVVKDSPAAMQQLVLAVDRILTSGKTQVLVVDSDPESLQQQLGLIAKQRFQIVAVENGTAALEVLDSHGGIDMVVTDLDLADMDG