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SCNpilot_expt_1000_bf_scaffold_8273_11

Organism: SCNPILOT_EXPT_1000_BF_Shinella_65_6

near complete RP 43 / 55 MC: 6 BSCG 46 / 51 MC: 8 ASCG 10 / 38 MC: 3
Location: comp(8973..9662)

Top 3 Functional Annotations

Value Algorithm Source
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI000380FD5F similarity UNIREF
DB: UNIREF100
  • Identity: 67.4
  • Coverage: 230.0
  • Bit_score: 318
  • Evalue 4.80e-84
  • rbh
Outer membrane protein {ECO:0000313|EMBL:EYR80558.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 78.2
  • Coverage: 229.0
  • Bit_score: 370
  • Evalue 1.50e-99
hypothetical protein; K07275 outer membrane protein similarity KEGG
DB: KEGG
  • Identity: 65.8
  • Coverage: 231.0
  • Bit_score: 311
  • Evalue 2.40e-82

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 690
ATGAAGAATATGGGTATGGGCATGCTGGGCGCCGCCGCCCTCAGCCTGGCCGCTATCGCAAGCCCGCTGCACGCGGCTGACCTCGCCGAACGCATGGCGCCGCCGGAGGCGACGATCGACGTCGCGGCGAAGAGCCCGTGGCAGATCCGCGTGCGCGGCCTCGGCGTGATAACCGAGAACAGCGGCTTCGTCGACGGGATTCCCGGATCCGACCTGTCCTTCTCGGATACGGTGGTGCCGGAACTCGACATCTCCTACTTCTTCACGGACAATATCGCCGCCGAACTCATTCTCGGTACGACCTATGCGAATGTGACGGCCGACGGCTCGATTGCCGGCCTCGGCAAGGTGGGCAAGACCTGGCTGCTGCCGCCGACATTGACGCTGCAATATCATTTCACCGATCTCGGCGCCTTCAAGCCCTATGTCGGCGCGGGCGTGAACTACTCGCTGTTCTACCACCAGTCCGGCACTGGTGCCTTTACGGACCTCGACGTGAAGAATACGCTGGGTGCGGCGCTTCAGGTGGGCTTCGACTACATGCTGGACGACCACTGGGGCATGAACTTCGACGTCAAGAAGCTGTTCCTCGAGCCGGAATGGAAGGGCACCACAGGTGGCGGCACGCTCACCGGCAAGGCCAAGCTCAATCCCTGGCTGATCGGCACGGGCGTGACCTACCGCTTCTGA
PROTEIN sequence
Length: 230
MKNMGMGMLGAAALSLAAIASPLHAADLAERMAPPEATIDVAAKSPWQIRVRGLGVITENSGFVDGIPGSDLSFSDTVVPELDISYFFTDNIAAELILGTTYANVTADGSIAGLGKVGKTWLLPPTLTLQYHFTDLGAFKPYVGAGVNYSLFYHQSGTGAFTDLDVKNTLGAALQVGFDYMLDDHWGMNFDVKKLFLEPEWKGTTGGGTLTGKAKLNPWLIGTGVTYRF*