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SCNpilot_expt_1000_bf_scaffold_10351_6

Organism: SCNPILOT_EXPT_1000_BF_Shinella_65_6

near complete RP 43 / 55 MC: 6 BSCG 46 / 51 MC: 8 ASCG 10 / 38 MC: 3
Location: comp(4200..5099)

Top 3 Functional Annotations

Value Algorithm Source
Glycine/betaine ABC transporter substrate-binding protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EEU2_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 88.0
  • Coverage: 299.0
  • Bit_score: 559
  • Evalue 1.60e-156
ABC-type glycine betaine transport, periplasmic subunit {ECO:0000313|EMBL:EHS49780.1}; Flags: Precursor;; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 79.6
  • Coverage: 299.0
  • Bit_score: 523
  • Evalue 1.80e-145
QAT familiy ABC transporter, periplasmic substrate-binding protein similarity KEGG
DB: KEGG
  • Identity: 76.9
  • Coverage: 299.0
  • Bit_score: 503
  • Evalue 4.40e-140

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Taxonomy

Rhizobium sp. PDO1-076 → Rhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 900
ATGAGCTGGGGGTCGGCCGGCGTCGCCGCGCATCTCGACAAGTTCATCCTGGAAAAGGGCTATGGTTGCACGGTGACGCTGGTGGCGGGCGACACCATGCCGACCTTCACCTCCATGAACGAGAAGGGCGCGCCGGACGTGGCGCCCGAAATGTGGGTGAACGCGGTGCGCAAGCCGCTCGACGCGGCCATCGCCGAAGGCCGCCTCATCCAGCTCGCCCCGCTCCTTTCGGAAGGCGGCGTCGAGGGCTGGTGGATCCCGAAATTCCTCGCCGATGCGCATTCCGACATCAAGACGGTGCAGGACGCGCTGAAGCACCCGGACCTCTTCCCCGCGCCGGGAAATCCGTCGAGGGGCGCGGTCCACAACTGCCCCTCCGGCTGGAACTGCCAGGTCTCGACCGACAACCTCTACCGTGCGCTCGCGGCCGACAAGCTCGGCTTCGATCTCGTCGAGACGGGCTCGGCTGCCGGCCTCGACGGCTCGATCGCCAATGCCTTCGAGACGAAGACCGGCTGGCTCGGCTACTACTGGGCGCCGACCGCCATCCTCGGCAAGTACGAGATGACCAAGCTCTCCTTCGGCGTGGAACACGACAAGGCCGAATGGGACACCTGCACGGCCGTGCCGGATTGCCCGCATCCGAAGGTCAATTCCTATCCGACCTCCGACGTCTTCACGGTCGTGACCAGGGCCTTCTCCGAAAAGGCGGGCATCGCCATGGACTACATGAAGACGCGCCAATGGGACAACCACACGGTCGGCAAGGTTCTCGCCTGGATGGGTGAGAACCGGGGCACGAACGAGGACGCGGCAAAGTACTTCCTGGAGAACTACGAGGACATGTGGACCAAATGGGTGAGCCCCGAAGTCGCCGGGAAGGTCAAGGCCGCTCTCTGA
PROTEIN sequence
Length: 300
MSWGSAGVAAHLDKFILEKGYGCTVTLVAGDTMPTFTSMNEKGAPDVAPEMWVNAVRKPLDAAIAEGRLIQLAPLLSEGGVEGWWIPKFLADAHSDIKTVQDALKHPDLFPAPGNPSRGAVHNCPSGWNCQVSTDNLYRALAADKLGFDLVETGSAAGLDGSIANAFETKTGWLGYYWAPTAILGKYEMTKLSFGVEHDKAEWDTCTAVPDCPHPKVNSYPTSDVFTVVTRAFSEKAGIAMDYMKTRQWDNHTVGKVLAWMGENRGTNEDAAKYFLENYEDMWTKWVSPEVAGKVKAAL*