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SCNpilot_expt_1000_bf_scaffold_20358_7

Organism: SCNPILOT_EXPT_1000_BF_Shinella_65_6

near complete RP 43 / 55 MC: 6 BSCG 46 / 51 MC: 8 ASCG 10 / 38 MC: 3
Location: 2535..2720

Top 3 Functional Annotations

Value Algorithm Source
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897}; EC=2.2.1.7 {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897};; 1-deoxyxylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 96.8
  • Coverage: 62.0
  • Bit_score: 119
  • Evalue 1.60e-24
1-deoxy-D-xylulose-5-phosphate synthase; K01662 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] similarity KEGG
DB: KEGG
  • Identity: 91.1
  • Coverage: 56.0
  • Bit_score: 103
  • Evalue 2.70e-20
1-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CD97_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 96.8
  • Coverage: 62.0
  • Bit_score: 119
  • Evalue 1.20e-24

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 186
ATGAGAGTGACACAGGCACCAGCCACCCCCCTACTCGACAAGGTTCGCATTCCGGCGGACCTGAAGGCCGTCGAGGACCGCGACCTGCCGCAACTGGCGGCGGAACTGCGCGCCGAGATGGTCGATGCCGTCTCGCGCACCGGCGGGCATCTCGGGGCGGGGCTCGGCGTGGTGGAACTGACCATC
PROTEIN sequence
Length: 62
MRVTQAPATPLLDKVRIPADLKAVEDRDLPQLAAELRAEMVDAVSRTGGHLGAGLGVVELTI