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SCNpilot_expt_1000_bf_scaffold_31010_1

Organism: SCNPILOT_EXPT_1000_BF_Shinella_65_6

near complete RP 43 / 55 MC: 6 BSCG 46 / 51 MC: 8 ASCG 10 / 38 MC: 3
Location: 354..1370

Top 3 Functional Annotations

Value Algorithm Source
HTH-type transcriptional regulator GalR n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D8W3_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 338.0
  • Bit_score: 649
  • Evalue 1.40e-183
  • rbh
Transcriptional regulator LacI family {ECO:0000313|EMBL:EYR80235.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 338.0
  • Bit_score: 649
  • Evalue 1.90e-183
periplasmic-binding protein/LacI transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 41.8
  • Coverage: 335.0
  • Bit_score: 258
  • Evalue 3.60e-66

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1017
ATGAACAACAAGAACTCGTCGGTCACCTTGCGTGACGTAGCGGCCGCGACGGGCGTGGATGTCTCGACTATTTCACGTGTGCTGCAGAACAAGGGGCGTGTCTCTGAGGAGACACGCACCCGTATTCTCGAAACAGCCGAACGTCTTGGCTATCACGGAAATCCCGTAGCGCGCGCCCTGAAGACAGCAAAGTCCTCGACCGTGCTCATGGTGGTGCCGCAGATCGAAAACCCGATCTTCGCCTCCGCTATCATCGGGGCGGAGATCGAGGCGCGCAGCAGAGGCTTTGCTCTGCTCGTTTCCTACGACAAGGGAGACGGGCGGGAGATTATCTCCGATATTTCGCGCTCCAGCATCATCGAAGGCGTCATCATCGCGAGCTTTGACGATGACAACCGGTTGCGCCAAGTTTTGAACAGTACGGACCTGCCGCATGTCGTCCTTAACCGGCACTTGCCCGGCGACGAGAACTGTGTCGCCATCGACACGCGGCGCGCAGCGCGCATGGGGGTGGAACACCTTATCGCGATGGGACACCGCCGTATCGGGCATCTTGCCGGTCGGCTTGGGCGCTTCAACGGCGACATGCGCCGGCGCGGGTGGGAGGAAGCGATGGCCGCAGCAGGGCTCGATCATGGCGATCATCTCATAGCGCAGGCGGGCTATAGCCCTGATGCGGTGCCGGCGGCCGTGGACAAACTTCTTGCCATCGGAGTGACGGCGATCCACGCAGCGACGCTGCTAACGGCAGCTGCCACCATCGCGCGGCTGCATGAACGGGATGTCCGCGTACCCGAGGAGGTGTCGGTTATCACCATGCATGATGACCTGCTCGCGCGGGTCGTCTATCCGCAGGTGACGACGGTCGCGTTGCCGTCGCAAGAGATGGGGCGAGTTGCCGCGCGTCGGTTAATCGATCTCATCCAGGGGGTGGAGCCCAACGGCACGCAATCCGCAGGCAGCCTTCTTCTTCCCCCCGACGAACTCATTATCCGCGCCTCTGTGGCTGCTCTTTGA
PROTEIN sequence
Length: 339
MNNKNSSVTLRDVAAATGVDVSTISRVLQNKGRVSEETRTRILETAERLGYHGNPVARALKTAKSSTVLMVVPQIENPIFASAIIGAEIEARSRGFALLVSYDKGDGREIISDISRSSIIEGVIIASFDDDNRLRQVLNSTDLPHVVLNRHLPGDENCVAIDTRRAARMGVEHLIAMGHRRIGHLAGRLGRFNGDMRRRGWEEAMAAAGLDHGDHLIAQAGYSPDAVPAAVDKLLAIGVTAIHAATLLTAAATIARLHERDVRVPEEVSVITMHDDLLARVVYPQVTTVALPSQEMGRVAARRLIDLIQGVEPNGTQSAGSLLLPPDELIIRASVAAL*