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SCNpilot_expt_1000_bf_scaffold_36895_1

Organism: SCNPILOT_EXPT_1000_BF_Shinella_65_6

near complete RP 43 / 55 MC: 6 BSCG 46 / 51 MC: 8 ASCG 10 / 38 MC: 3
Location: comp(1..1158)

Top 3 Functional Annotations

Value Algorithm Source
Type III effector Hrp-dependent outer protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D3B3_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 99.0
  • Coverage: 386.0
  • Bit_score: 752
  • Evalue 2.90e-214
  • rbh
Type III effector Hrp-dependent outer protein {ECO:0000313|EMBL:EYR78676.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 99.0
  • Coverage: 386.0
  • Bit_score: 752
  • Evalue 4.00e-214
type III effector Hrp-dependent outer protein similarity KEGG
DB: KEGG
  • Identity: 63.4
  • Coverage: 393.0
  • Bit_score: 496
  • Evalue 8.90e-138

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1158
ATGACACGTCCCCTGATCAGCTACTACGGCGACGATTTCACCGGCTCGACGGACGTCATGGAGGCCCTCGCGTCCAATGGCGTGGAGACCGTGCTTTTCCTCGATGTGCCGGATGCGGACCTCCTGTCACGGTTTGCCGGTGCGCGGGCCTTCGGCCTGGCCGGCACCAGCCGCAGCGAGACACCGGGCTGGATGGACGTGCATCTTCGTGCGGCCTTCGGCTGGCTGAAGACGCTCGATGCCGAGCTTTGCCACTACAAGATCTGCTCGACCTTCGATTCCGCCCCCCATGTCGGCAACATCGGCCGCGCAATAGAGATCGGCCGTGCCGTCTTCGGCGAGGCGACGGTGCCGCTCATCGTCGGTGCGCCGCAGATCCGGCGCTACACGGCCTTTGGCGACCTTTTTGCGGCCTATCAGGGGCGTAGCTATCGCATCGATCGCCATCCGGTCATGGCACGTCACCCGGTGACGCCGATGAACGAGGCCAATCTCCTGTTGCATCTCTCGCGGCAGACGACGCTCTCCTCCACCCTCATCGACATGGTTGCGCTGCTGGCCGATCCGCAGCCGGAAAACGCCGATATCCTTCTTGTCGACGTGCTCGATGCGGCGACGCAGGTTGCGGCCGGTGCCCTGCTCTGGAACCGGCTGCGGGAGAAGAGCCGCTTTGTCTGTGGCTCCTCCGGTCTGGAATATGCCCTGATCCCGACATGGCGGGACCGGGGCCTGGTCGGCGAGAAGCCCGCCTTTCCCGCAGCCGGGCCGGTGGATCGCATCGCTGTCGTTTCGGGCAGCGTCTCGCCCACCACCGAACGGCAGATCCGCCATGCGCTGGAAAACGGCTTTGGTGGCGTCACGCTCGATCCACTTGTGCTGTCGGGCGAGAACAACGCGACGGCGGTTGCTGCGGCCGTCGAGGCTGGTCTCAGGATCTTGCAGGAAGGGCGCAGCGTTGTGCTCTATACCGCGCTCGGGCCTGCGGCGGACCGCGGCGGTGAACTCGATTCTGCGGCAGGCGCCCGTCATCGTCTCGGGCGTGCCTTGGGGCGTATCCAGTCGGAGATCGTCGCACGTGCCGGTCTTGTTCGCGCGGTCGTCGCCGGTGGCGACACATCAAGCCATGCGCTTGGTGAAATGGGGATCGCGGCACTCACC
PROTEIN sequence
Length: 386
MTRPLISYYGDDFTGSTDVMEALASNGVETVLFLDVPDADLLSRFAGARAFGLAGTSRSETPGWMDVHLRAAFGWLKTLDAELCHYKICSTFDSAPHVGNIGRAIEIGRAVFGEATVPLIVGAPQIRRYTAFGDLFAAYQGRSYRIDRHPVMARHPVTPMNEANLLLHLSRQTTLSSTLIDMVALLADPQPENADILLVDVLDAATQVAAGALLWNRLREKSRFVCGSSGLEYALIPTWRDRGLVGEKPAFPAAGPVDRIAVVSGSVSPTTERQIRHALENGFGGVTLDPLVLSGENNATAVAAAVEAGLRILQEGRSVVLYTALGPAADRGGELDSAAGARHRLGRALGRIQSEIVARAGLVRAVVAGGDTSSHALGEMGIAALT