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SCNpilot_expt_1000_bf_scaffold_48156_3

Organism: SCNPILOT_EXPT_1000_BF_Shinella_65_6

near complete RP 43 / 55 MC: 6 BSCG 46 / 51 MC: 8 ASCG 10 / 38 MC: 3
Location: 1156..1593

Top 3 Functional Annotations

Value Algorithm Source
Putative transmembrane transporter component n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EQ92_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 95.9
  • Coverage: 146.0
  • Bit_score: 264
  • Evalue 5.30e-68
Putative transmembrane transporter component {ECO:0000313|EMBL:EYR82585.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 95.9
  • Coverage: 146.0
  • Bit_score: 264
  • Evalue 7.40e-68
transmembrane transporter component; K02004 putative ABC transport system permease protein similarity KEGG
DB: KEGG
  • Identity: 78.6
  • Coverage: 145.0
  • Bit_score: 220
  • Evalue 4.70e-55

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 438
ATGATCGGCTTCATCCTCGCGGACCTTCGCCGGTTCAAGGGCGGCATGTTCGCCGTCATCGTGCTGGTCGCCCTTTCCATCGCCCTCAGCGTTGCCGTCACCCTCCAGGAACGGGCCGTGCGGCTGGGCAGCGCGCGGGCGGCGGAAAAGTTCGACCTCGTCGTCGGCGCCGCCGGCAGCGAGACGCAGCTCGCCTTGTCGGCCGTCTTTCTCCAGCCATCCCCCTTGCCGCTGATGTCTGGCGCCGTGCTGGAGAAACTCGGGCGTGATCCGCGCGTCTCCTTTGCCGCCCCCGTCGGCTTCGGCGATTCCGCGGATGGCCGGCCGGTCGTCGGTACGACGACGGCGCTGGTTGCCGCCCTGTCGCCGACACTTGCAGAGGGCTCGGTCTTCACCAGCCTTGGCGAGGCGGTGGTCGGCGCCGACGTACCGATGCGA
PROTEIN sequence
Length: 146
MIGFILADLRRFKGGMFAVIVLVALSIALSVAVTLQERAVRLGSARAAEKFDLVVGAAGSETQLALSAVFLQPSPLPLMSGAVLEKLGRDPRVSFAAPVGFGDSADGRPVVGTTTALVAALSPTLAEGSVFTSLGEAVVGADVPMR