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SCNpilot_expt_1000_bf_scaffold_44209_1

Organism: SCNPILOT_EXPT_1000_BF_Shinella_65_6

near complete RP 43 / 55 MC: 6 BSCG 46 / 51 MC: 8 ASCG 10 / 38 MC: 3
Location: comp(2..643)

Top 3 Functional Annotations

Value Algorithm Source
Aliphatic amidase expression-regulating protein AmiC n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZ46_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 80.8
  • Coverage: 214.0
  • Bit_score: 363
  • Evalue 2.10e-97
  • rbh
ABC-type branched-chain amino acid transport system periplasmic component {ECO:0000313|EMBL:EYR84497.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 80.8
  • Coverage: 214.0
  • Bit_score: 363
  • Evalue 2.90e-97
putative nitrile hydratase regulator similarity KEGG
DB: KEGG
  • Identity: 48.1
  • Coverage: 216.0
  • Bit_score: 213
  • Evalue 8.40e-53

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 642
ATGAACGAAAAAGGCGGCATCCTCGGCCGCCAGATCGAATTGCTCGCCGCCGACGCCGGCGGCAGCCCGGAAGCCGTCGTCGAACGCGCCCGCGACCTGGTCGAGCGGCAGGGCGCCAACGCGCTGATCGGCGTGCACCTGTCTTCCGTCCGCGTTGCGCTCGCCAAGGCTTTTTCCGGCCGGGTTCCTTATGTTTTCGCACCGCTTTTCGAGGGCGGCAATGATGGCGAGGCGGTGTTCACCATCGGCGAAGTGCCGGAACGCCAGTTTGCCGGCCCCGTCAGCCACCTGATGCAGCATCATGCCGCCAAGCGCTGGTTTCTTGTCGGCAACGACTATGTCTGGCCGCGCAGCTCGCATGGCTGGGTGCGTCAATTCGTGCTGGAAAACGGCGGCGAGATCGTCGGCGAGGAATATGTCGGCATCGGCCAGGAGACCGACCATATCGTCGACCTGGTCGAGGCCGCCGCCCCCGATATCGTCTTCCAGTCGCTGGTCGGCTCCGAATGCGTGCCGTTCAACCGGATGTTTGCCGAGCGCGGGCTGGCGCAGCGGATCTTGCGGCTCTCGGGCGCGGTCGAGGAGAACACGCTGATGGCGATCGGCGAGGAAAACACCGAAAATCTCTTCTGCGCCGCCGGC
PROTEIN sequence
Length: 214
MNEKGGILGRQIELLAADAGGSPEAVVERARDLVERQGANALIGVHLSSVRVALAKAFSGRVPYVFAPLFEGGNDGEAVFTIGEVPERQFAGPVSHLMQHHAAKRWFLVGNDYVWPRSSHGWVRQFVLENGGEIVGEEYVGIGQETDHIVDLVEAAAPDIVFQSLVGSECVPFNRMFAERGLAQRILRLSGAVEENTLMAIGEENTENLFCAAG