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SCNpilot_expt_1000_bf_scaffold_48671_1

Organism: SCNPILOT_EXPT_1000_BF_Shinella_65_6

near complete RP 43 / 55 MC: 6 BSCG 46 / 51 MC: 8 ASCG 10 / 38 MC: 3
Location: 80..730

Top 3 Functional Annotations

Value Algorithm Source
HTH-type transcriptional regulator RutR n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CYT8_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 99.5
  • Coverage: 216.0
  • Bit_score: 428
  • Evalue 5.30e-117
  • rbh
HTH-type transcriptional regulator RutR {ECO:0000313|EMBL:EYR80906.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 99.5
  • Coverage: 216.0
  • Bit_score: 428
  • Evalue 7.50e-117
TetR family transcriptional regulator; K09017 TetR/AcrR family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 90.1
  • Coverage: 213.0
  • Bit_score: 389
  • Evalue 8.70e-106
  • rbh

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 651
ATGGCATTACCAAGGGCAGCGAGGACACAGCGGCGCACGCGCATCCAGGAGGCGAAGGAGGAGCAGATCCTCGAGGCGGCGCTGGAGGTTTTCTCGCTGCACGGCTTTCGCGGTGCCACCGTCGACCAGATCGCCGAGGTGGCCGGCATGTCGAAGCCGAACCTGCTCTACTACTTCCGTACCAAGGAGGCGATGCACCGGGCGCTGATCAACCGGGTGCTCGATACCTGGCTCGATCCGCTGCGCGAATTCGATGCGGAAGGCAACCCGGTGTCGGAAATCCGCAGTTACATCAGGCGCAAACTGGAGATGGCGCGCGATTTTCCGCGCGAAAGCCGGTTGTTCGCCAATGAAATCCTGCAGGGCGCGCCGAACATCGAGGACGAACTGAAGGGGCCGCTGAAGTCGCTCGTCGACGAGAAGGCGGAAGTCATCCGCACTTGGGCGAAGGCGGGCAAGATCGCCAAATGCGACCCGTATCACCTGATCTTCTCGATCTGGTCGACCACCCAGCACTATGCCGACTTCGACGTGCAGGTGCGCGCCGTGCTCGGGCAGGATCAGGCCGGCGAGGGCCGGTTCGAGGATGCGGCGCGCTTCCTCGAACAACTCTTCATCGGCGGTCTCAAGGTCAGCGAAGAGCCGGTCTGA
PROTEIN sequence
Length: 217
MALPRAARTQRRTRIQEAKEEQILEAALEVFSLHGFRGATVDQIAEVAGMSKPNLLYYFRTKEAMHRALINRVLDTWLDPLREFDAEGNPVSEIRSYIRRKLEMARDFPRESRLFANEILQGAPNIEDELKGPLKSLVDEKAEVIRTWAKAGKIAKCDPYHLIFSIWSTTQHYADFDVQVRAVLGQDQAGEGRFEDAARFLEQLFIGGLKVSEEPV*