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SCNpilot_expt_1000_bf_scaffold_48671_3

Organism: SCNPILOT_EXPT_1000_BF_Shinella_65_6

near complete RP 43 / 55 MC: 6 BSCG 46 / 51 MC: 8 ASCG 10 / 38 MC: 3
Location: 1810..2010

Top 3 Functional Annotations

Value Algorithm Source
Protein ExoD n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C9W4_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 67.0
  • Bit_score: 133
  • Evalue 6.40e-29
ABC-type transport system permease component {ECO:0000313|EMBL:EYR80908.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 67.0
  • Bit_score: 133
  • Evalue 9.00e-29
exoD; ExoD protein similarity KEGG
DB: KEGG
  • Identity: 58.2
  • Coverage: 67.0
  • Bit_score: 79
  • Evalue 3.50e-13

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 201
ATGACGACGGCCATCGGCTTCAAGGACACGGACCGCAAGACGAGCGAACTGCTCGAGGACATCATCCACTCGATCAAGGGCGAGCACATCACGCTGCGCGATCTGCTCGCGATGATGGGCGAAAGCGGCCTGCTCCTGCTCTGCGCCTTTCTGTCGCTGCCCTTTCTGTTCCCGGTCTCGATCCCTGGCGTTTCCACTGTC
PROTEIN sequence
Length: 67
MTTAIGFKDTDRKTSELLEDIIHSIKGEHITLRDLLAMMGESGLLLLCAFLSLPFLFPVSIPGVSTV