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SCNpilot_expt_1000_bf_scaffold_83907_2

Organism: SCNPILOT_EXPT_1000_BF_Shinella_65_6

near complete RP 43 / 55 MC: 6 BSCG 46 / 51 MC: 8 ASCG 10 / 38 MC: 3
Location: comp(819..1037)

Top 3 Functional Annotations

Value Algorithm Source
Aliphatic amidase expression-regulating protein AmiC n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D0C6_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 72.0
  • Bit_score: 147
  • Evalue 4.70e-33
ABC-type branched-chain amino acid transport system periplasmic component {ECO:0000313|EMBL:EYR81653.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 72.0
  • Bit_score: 147
  • Evalue 6.60e-33
ABC transporter substrate-binding protein; K01999 branched-chain amino acid transport system substrate-binding protein similarity KEGG
DB: KEGG
  • Identity: 62.0
  • Coverage: 71.0
  • Bit_score: 94
  • Evalue 1.90e-17

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 219
CGCGTGCGCGCCGAGGTGCTGGCCCGCGACTGGCCCTCGCTCTTCGGCGACATGCGGGTGGATGCGGCGACCAACCATGCGGCCCTGCCCTTCCTGCTCGGCCGCATCAACGACGGACACGGCTTCGACGTCATCGCCGCCGCCCCGGCACTCGCCGCCGATCCCTATCTGACGGGCGCCACGACACGGCCCGCCCCACGCCTGAGGATCGTGTCATGA
PROTEIN sequence
Length: 73
RVRAEVLARDWPSLFGDMRVDAATNHAALPFLLGRINDGHGFDVIAAAPALAADPYLTGATTRPAPRLRIVS*