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SCNpilot_expt_1000_bf_scaffold_87957_2

Organism: SCNPILOT_EXPT_1000_BF_Shinella_65_6

near complete RP 43 / 55 MC: 6 BSCG 46 / 51 MC: 8 ASCG 10 / 38 MC: 3
Location: 647..1033

Top 3 Functional Annotations

Value Algorithm Source
Permease component of ribose/xylose/arabinose/galactoside ABC-type transporter n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CHS0_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 91.5
  • Coverage: 129.0
  • Bit_score: 233
  • Evalue 8.80e-59
Ribose/xylose/arabinose/galactoside ABC-type transport system permease component {ECO:0000313|EMBL:EYR82497.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 91.5
  • Coverage: 129.0
  • Bit_score: 233
  • Evalue 1.20e-58
inner-membrane translocator; K02057 simple sugar transport system permease protein similarity KEGG
DB: KEGG
  • Identity: 73.6
  • Coverage: 129.0
  • Bit_score: 189
  • Evalue 6.00e-46

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 387
GTGCAGCAATTGCTGACGAACGGCGGCAACCCGGTCTACCTGCCGCCGGCCGGCGTGCCGGAAGCCTTCCGCTTCCTCGGCCACGGCACGCTCGCCGGCCTACCCGTGCCGCTCGTCGTCACCGCGCTCGTCATCGGCGGGGCGTGGGTCGTGCTCTCGCGCACGCGTTTCGGCCGGGTGGCGCTCGCCACCGGCATCCAGGCGAGCGTCGTGCGCTATTCGGGCCTGCGCCTGCCGCGCATTGCCGCCGCCACCTACATTCTGGTCTCGACGATCGCCGCCGTGGTCGGCCTCATCCTCACCTCGACGGTCACGGTCTACATCCCGTCCTCCGGCAATGCCTTCCTCCTCAACGCCATCGGCGCCACCTTCATCGGCACGACCTTC
PROTEIN sequence
Length: 129
VQQLLTNGGNPVYLPPAGVPEAFRFLGHGTLAGLPVPLVVTALVIGGAWVVLSRTRFGRVALATGIQASVVRYSGLRLPRIAAATYILVSTIAAVVGLILTSTVTVYIPSSGNAFLLNAIGATFIGTTF