ggKbase home page

SCNpilot_expt_1000_bf_scaffold_1146_29

Organism: SCNPILOT_EXPT_1000_BF_Rhizobium_63_7

partial RP 36 / 55 MC: 3 BSCG 36 / 51 MC: 5 ASCG 9 / 38 MC: 1
Location: 25231..25569

Top 3 Functional Annotations

Value Algorithm Source
Integration host factor subunit alpha n=3 Tax=Rhizobium RepID=K0PUL5_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 92.9
  • Coverage: 112.0
  • Bit_score: 204
  • Evalue 5.00e-50
Integration host factor subunit alpha {ECO:0000256|HAMAP-Rule:MF_00380, ECO:0000256|RuleBase:RU004485}; Short=IHF-alpha {ECO:0000256|HAMAP-Rule:MF_00380};; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 92.9
  • Coverage: 112.0
  • Bit_score: 205
  • Evalue 5.40e-50
integration host factor subunit alpha similarity KEGG
DB: KEGG
  • Identity: 92.0
  • Coverage: 112.0
  • Bit_score: 202
  • Evalue 7.80e-50

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Rhizobium sp. LPU83 → Rhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 339
ATGGCGGGGAAGACAGTGACGCGTGCGGATCTGGCGGAATCGGTTTTCCGGAAAGTCGGGCTTTCGCGAACGGAATCGGCGGAACTTGTCGAGACGGTCATCGACGAGATTTGCAACGCCATCGTGCGCGGCGAAACCGTAAAACTCTCTTCCTTCGCCACGTTCCAGGTTCGCGACAAGAACGAGCGTATCGGCCGCAATCCGAAGACCGGCGAGGAAGTTCCGATTTCGCCGCGCCGGGTGATGACCTTCAAGGCGTCCAACGTCTTGAAGCAGCGTGTTCTCAAGGCGCACAATGTCCGCAAGACCAAGCAGAAGCCGGTTAATCCCGCGACCTGA
PROTEIN sequence
Length: 113
MAGKTVTRADLAESVFRKVGLSRTESAELVETVIDEICNAIVRGETVKLSSFATFQVRDKNERIGRNPKTGEEVPISPRRVMTFKASNVLKQRVLKAHNVRKTKQKPVNPAT*