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SCNpilot_expt_1000_bf_scaffold_2984_16

Organism: SCNPILOT_EXPT_1000_BF_Rhizobiales_64_6

near complete RP 42 / 55 MC: 2 BSCG 41 / 51 MC: 4 ASCG 7 / 38
Location: comp(12882..13493)

Top 3 Functional Annotations

Value Algorithm Source
3-isopropylmalate dehydratase small subunit; K01704 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] similarity KEGG
DB: KEGG
  • Identity: 78.6
  • Coverage: 201.0
  • Bit_score: 339
  • Evalue 5.70e-91
  • rbh
3-isopropylmalate dehydratase small subunit {ECO:0000255|HAMAP-Rule:MF_01031}; EC=4.2.1.33 {ECO:0000255|HAMAP-Rule:MF_01031};; Alpha-IPM isomerase {ECO:0000255|HAMAP-Rule:MF_01031}; Short=IPMI {ECO:0000255|HAMAP-Rule:MF_01031};; Isopropylmalate isomerase {ECO:0000255|HAMAP-Rule:MF_01031}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 78.6
  • Coverage: 201.0
  • Bit_score: 339
  • Evalue 2.50e-90
3-isopropylmalate dehydratase small subunit n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=LEUD_PARL1 similarity UNIREF
DB: UNIREF100
  • Identity: 78.6
  • Coverage: 201.0
  • Bit_score: 339
  • Evalue 1.80e-90
  • rbh

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Taxonomy

Parvibaculum lavamentivorans → Parvibaculum → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 612
ATGGACAAATTCACGCAACTGACCGGCGTCGCCGCCCCGATGCCGGAGATCAATATCGACACCGACCGGATCATTCCGAAGAACTACCTGAAGACTATCAAGCGGACCGGTCTCGGCACGGCTGCGTTCGCCGAGGTGCGCTACGACGAAAACGGCAAGGAAAACCCGGATTTCGTTCTCAATAAGCCCGCCTATCGCAAGGCGCAGATCCTCGTCACGGGCGAGAACTTCGGCTGCGGCTCGAGCCGCGAGCACGCCCCCTGGGCGCTTCTCGACTTCGGCATCCGCTGCGTCATCTCGCCGTCATTCGCCGACATCTTCTACAACAACTGCTTCAAGAACGGCATTCTGCCCATCAAGCTGCCGCAGGAAGACGTCGACAAGCTGATGGACGACGCCGGGCGCGGCGCGAATGCGGTCATCACCGTCGACCTCGAGAAGCAGGAAATCCGCGGCCCCGATGGCGGCGTGGTCAAGTTCGACATCGATCCCTTCCGCAAGCATTGCCTGCTGAACGGCCTCGACGACATCGGCCTGACGCTTCAGCACGAGAAGCAGATCAGCGACTACGAGAGCCGCCAGAACGCCGACAAGCCCTGGCTCGCGGCTTAG
PROTEIN sequence
Length: 204
MDKFTQLTGVAAPMPEINIDTDRIIPKNYLKTIKRTGLGTAAFAEVRYDENGKENPDFVLNKPAYRKAQILVTGENFGCGSSREHAPWALLDFGIRCVISPSFADIFYNNCFKNGILPIKLPQEDVDKLMDDAGRGANAVITVDLEKQEIRGPDGGVVKFDIDPFRKHCLLNGLDDIGLTLQHEKQISDYESRQNADKPWLAA*