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SCNpilot_cont_500_bf_scaffold_5315_9

Organism: SCNPILOT_CONT_500_BF_Rhizobiales_63_8

partial RP 30 / 55 MC: 5 BSCG 30 / 51 MC: 6 ASCG 11 / 38 MC: 5
Location: comp(7506..8159)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Afipia sp. 1NLS2 RepID=D6V466_9BRAD similarity UNIREF
DB: UNIREF100
  • Identity: 68.7
  • Coverage: 182.0
  • Bit_score: 254
  • Evalue 1.10e-64
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:EFI52746.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 68.7
  • Coverage: 182.0
  • Bit_score: 254
  • Evalue 1.50e-64
FecI-like sigma-24 factor similarity KEGG
DB: KEGG
  • Identity: 59.4
  • Coverage: 212.0
  • Bit_score: 238
  • Evalue 2.50e-60

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Taxonomy

Afipia sp. 1NLS2 → Afipia → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 654
ATGGCAAAGGTGCCTCGCAACACTGTCTCGCATCTGAGACTCGTACCCGGCAATGACCCGCGCGACGCGGCTTCGACAGACGGTGCCGACCAATCCTGCCGTCCAATCCCTGACATTGACTGGGCGATCCTCATGGCGCGCGCCCAGGACGGCGACGCGAAAGCCTATCTTCGACTTCTGGAAGAGATGACACCCTATCTCCGCCTGCTCGCATCGCGTCGGCTTTACGACCGGCAGGACATTGAGGACGCCATCCAGGACGTTCTTCTGACTGTTCATGCCATTCGGCATACCTATGATCCCGCGCGCCCGTTCGGACCCTGGCTGGTGACGATCGCAAGCCGCCGTTTTGTCGACCGTCTGCGCCGTCAGAGTCGTCAGAAGGCGCGAGAGGCGCCTTTGACGCTTGAGCACGAAACCTTTGTGGAGCATCGAGCGAATATAGAAGAGAGCTTGGAGCGAAGGGAATTGGAAGGTGCCATTGAGAATCTCCCACCCAGGCAGCAGGAAGCCATTCGTTTGCTCAAGCTCAAGGAGATGTCCCTGAAGGAAGCTGCAAAGACGAGTGGAATGTCCGTTGTCTCTCTCAAGGTAGCCACGCATCGCGCTCTGAAAAGCCTTCGCAAGATGCTGGTCGATCGGCGAGACCCATGA
PROTEIN sequence
Length: 218
MAKVPRNTVSHLRLVPGNDPRDAASTDGADQSCRPIPDIDWAILMARAQDGDAKAYLRLLEEMTPYLRLLASRRLYDRQDIEDAIQDVLLTVHAIRHTYDPARPFGPWLVTIASRRFVDRLRRQSRQKAREAPLTLEHETFVEHRANIEESLERRELEGAIENLPPRQQEAIRLLKLKEMSLKEAAKTSGMSVVSLKVATHRALKSLRKMLVDRRDP*