ggKbase home page

SCNpilot_cont_500_bf_scaffold_610

Search features with annotation key words

Displaying items 31-60 of 79 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_610_31
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(35332..35688)
DNA (357bp) protein (119aa)
50S ribosomal protein L20 n=1 Tax=Commensalibacter intestini A911 RepID=G6EYS5_9PROT
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
rplT; 50S ribosomal protein L20; K02887 large subunit ribosomal protein L20
SCNpilot_cont_500_bf_scaffold_610_32
Acidomonas methanolica, Acidomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(35702..35905)
DNA (204bp) protein (68aa)
50S ribosomal protein L35 n=1 Tax=Asaia sp. SF2.1 RepID=V8A988_9PROT
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=1231351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidomonas.;" source="Acidomonas methanolica NBRC 104435.;"
rpmI; 50S ribosomal protein L35; K02916 large subunit ribosomal protein L35
SCNpilot_cont_500_bf_scaffold_610_33
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36131..37339
DNA (1209bp) protein (403aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI0003608318
Transporter, major facilitator family protein {ECO:0000313|EMBL:EFH13290.1}; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
MFS efflux transporter
SCNpilot_cont_500_bf_scaffold_610_34
Bradyrhizobium oligotrophicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37518..38771
DNA (1254bp) protein (418aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium oligotrophicum S58 RepID=M4ZL21_9BRAD rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:BAM86950.1}; TaxID=1245469 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium oligotrophicum S58.;"
SCNpilot_cont_500_bf_scaffold_610_35
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(39066..39893)
DNA (828bp) protein (276aa)
HpcH/HpaI aldolase n=1 Tax=alpha proteobacterium BAL199 RepID=A8TK79_9PROT
HpcH/HpaI aldolase
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
SCNpilot_cont_500_bf_scaffold_610_36
GWC2_Nitrospirae_42_7_curated, Nitrospirae, Bacteria

Not on your lists

comp(39946..41406)
DNA (1461bp) protein (487aa)
Beta-lactamase id=4936715 bin=GWC2_CP_Nitrospirae-rel_42_7 species=delta proteobacterium NaphS2 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
beta-lactamase
Tax=GWC2_Nitrospirae_42_7_curated
SCNpilot_cont_500_bf_scaffold_610_37
Burkholderia sp. MR1, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(41429..42310)
DNA (882bp) protein (294aa)
phytanoyl-CoA dioxygenase n=1 Tax=Herbaspirillum lusitanum RepID=UPI0002D931BB
Phytanoyl-CoA dioxygenase {ECO:0000313|EMBL:KIG01622.1}; TaxID=870478 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. MR1.;"
phytanoyl-CoA dioxygenase
SCNpilot_cont_500_bf_scaffold_610_38
Clostridium tetanomorphum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

42602..43585
DNA (984bp) protein (328aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WSD1_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KAJ50059.1}; TaxID=1230342 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium tetanomorphum DSM 665.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_610_39
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(43723..44862)
DNA (1140bp) protein (380aa)
Chaperone protein DnaJ n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BW83_GRABC
Chaperone protein DnaJ {ECO:0000256|HAMAP-Rule:MF_01152}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
molecular chaperone DnaJ; K03686 molecular chaperone DnaJ
SCNpilot_cont_500_bf_scaffold_610_40
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(45003..46925)
DNA (1923bp) protein (641aa)
Chaperone protein DnaK n=2 Tax=Granulibacter bethesdensis RepID=DNAK_GRABC rbh
Chaperone protein DnaK {ECO:0000256|HAMAP-Rule:MF_00332}; HSP70 {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock 70 kDa protein {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock protein 70 {ECO:0000256|HAMAP-Rule:MF_00332}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
dnaK; molecular chaperone DnaK; K04043 molecular chaperone DnaK rbh
SCNpilot_cont_500_bf_scaffold_610_41
Tanticharoenia sakaeratensis, Tanticharoenia, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(47060..47680)
DNA (621bp) protein (207aa)
Protein GrpE n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BW81_GRABC
Protein GrpE {ECO:0000256|HAMAP-Rule:MF_01151}; HSP-70 cofactor {ECO:0000256|HAMAP-Rule:MF_01151}; TaxID=1231623 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Tanticharoenia.;" source="Tanticharoenia sakaeratensis NBRC 103193.;"
heat shock protein GrpE; K03687 molecular chaperone GrpE
SCNpilot_cont_500_bf_scaffold_610_42
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(47742..49436)
DNA (1695bp) protein (565aa)
Drug resistance MFS transporter, drug:H+ antiporter-2 family n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A3K4_9PROT rbh
Drug resistance MFS transporter, drug:H+ antiporter-2 family {ECO:0000313|EMBL:EHL98956.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
emrB_qacA; multidrug resistance transporter EmrB/QacA rbh
SCNpilot_cont_500_bf_scaffold_610_43
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

49731..51056
DNA (1326bp) protein (442aa)
l-serine dehydratase 1 (EC:4.3.1.17); K01752 L-serine dehydratase [EC:4.3.1.17]
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI000303419D rbh
Serine dehydratase {ECO:0000313|EMBL:KJB91100.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
SCNpilot_cont_500_bf_scaffold_610_44
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

51255..52805
DNA (1551bp) protein (517aa)
Putative uncharacterized protein n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BVP0_GRABC
Uncharacterized protein {ECO:0000313|EMBL:AHJ61964.1}; TaxID=1052004 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis CGDNIH3.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_610_45
Komagataeibacter medellinensis, Komagataeibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

52802..53194
DNA (393bp) protein (131aa)
4-carboxymuconolactone decarboxylase; K01607 4-carboxymuconolactone decarboxylase [EC:4.1.1.44]
4-carboxymuconolactone decarboxylase n=1 Tax=Gluconacetobacter xylinus (strain NBRC 3288 / BCRC 11682 / LMG 1693) RepID=G2I265_GLUXN
4-carboxymuconolactone decarboxylase {ECO:0000313|EMBL:BAK82481.1}; TaxID=634177 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Komagataeibacter.;" source="Komagataeibacter medellinensis (strain NBRC 3288 / BCRC 11682 / LMG; 1693 / Kondo 51) (Gluconacetobacter medellinensis).;"
SCNpilot_cont_500_bf_scaffold_610_46
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(53321..55069)
DNA (1749bp) protein (583aa)
PAS/PAC sensor hybrid histidine kinase n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IAH5_METNO rbh
PAS/PAC sensor hybrid histidine kinase rbh
PAS/PAC sensor hybrid histidine kinase {ECO:0000313|EMBL:ACL61020.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
SCNpilot_cont_500_bf_scaffold_610_47
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

55309..56013
DNA (705bp) protein (235aa)
Haloacid dehalogenase, type II n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IK48_9BRAD
Haloacid dehalogenase, type II {ECO:0000313|EMBL:ERF82964.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
haloacid dehalogenase-like hydrolase
SCNpilot_cont_500_bf_scaffold_610_48
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

56161..56625
DNA (465bp) protein (155aa)
Glycine dehydrogenase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1GZP3_9BRAD
Glycine dehydrogenase {ECO:0000313|EMBL:ERF82962.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_610_49
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(56715..58277)
DNA (1563bp) protein (521aa)
adenylate cyclase (EC:4.6.1.1)
Adenylate cyclase n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TNY5_MESCW
Transcriptional regulator {ECO:0000313|EMBL:GAN76277.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
SCNpilot_cont_500_bf_scaffold_610_50
Bradyrhizobium oligotrophicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

58374..59753
DNA (1380bp) protein (460aa)
Putative carotenoid oxygenase n=1 Tax=Bradyrhizobium oligotrophicum S58 RepID=M4ZR42_9BRAD
putative carotenoid oxygenase
Putative carotenoid oxygenase {ECO:0000313|EMBL:BAM88685.1}; TaxID=1245469 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium oligotrophicum S58.;"
SCNpilot_cont_500_bf_scaffold_610_51
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

59779..60339
DNA (561bp) protein (187aa)
Uncharacterized protein (Fragment) n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YAU4_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD50556.1}; Flags: Fragment;; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
conserved membrane protein of unknown function
SCNpilot_cont_500_bf_scaffold_610_52
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(60363..60566)
DNA (204bp) protein (68aa)
Uncharacterized protein n=1 Tax=Asaia sp. SF2.1 RepID=V8A5Q2_9PROT
Uncharacterized protein {ECO:0000313|EMBL:GAN77597.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_610_53
unknown

Not on your lists

60744..60986
DNA (243bp) protein (81aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_610_54
unknown

Not on your lists

comp(61341..61529)
DNA (189bp) protein (63aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_610_55
Asticcacaulis benevestitus, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

61745..62860
DNA (1116bp) protein (372aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1121022 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis benevestitus DSM 16100 = ATCC BAA-896.;"
two component sensor histidine kinase (EC:2.7.3.-)
Uncharacterized protein n=1 Tax=Asticcacaulis benevestitus DSM 16100 = ATCC BAA-896 RepID=V4PL16_9CAUL
SCNpilot_cont_500_bf_scaffold_610_trna_1
unknown

Not on your lists

comp(63102..63174)
DNA (73bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_610_56
unknown

Not on your lists

comp(63263..63436)
DNA (174bp) protein (58aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_610_57
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(63485..65197)
DNA (1713bp) protein (571aa)
Choline dehydrogenase-like flavoprotein n=1 Tax=Bradyrhizobium sp. WSM471 RepID=H5YPD0_9BRAD rbh
putative glucose dehydrogenase rbh
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_500_bf_scaffold_610_58
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(65300..65671)
DNA (372bp) protein (124aa)
hypothetical protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI00037F1249
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_500_bf_scaffold_610_59
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(65850..66560)
DNA (711bp) protein (237aa)
haloacid dehalogenase; K01560 2-haloacid dehalogenase [EC:3.8.1.2]
Haloacid dehalogenase, type II n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IVU5_RHOP2
Haloacid dehalogenase {ECO:0000313|EMBL:ETR75037.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
Displaying items 31-60 of 79 in total

View Taxonomy