ggKbase home page

SCNpilot_expt_500_p_scaffold_4624_1

Organism: scnpilot_dereplicated_Eukaryote_unknown_9

partial RP 23 / 55 MC: 5 BSCG 11 / 51 MC: 4 ASCG 12 / 38 MC: 8
Location: 120..1967

Top 3 Functional Annotations

Value Algorithm Source
60 kDa SS-A/Ro ribonucleoprotein homolog n=1 Tax=Caenorhabditis elegans RepID=RO60_CAEEL similarity UNIREF
DB: UNIREF100
  • Identity: 39.3
  • Coverage: 634.0
  • Bit_score: 441
  • Evalue 1.70e-120
  • rbh
rop-1; RO (Ro) ribonucleoProtein family member (rop-1); K11089 60 kDa SS-A/Ro ribonucleoprotein similarity KEGG
DB: KEGG
  • Identity: 39.3
  • Coverage: 634.0
  • Bit_score: 441
  • Evalue 5.40e-121
  • rbh
60 kDa SS-A/Ro ribonucleoprotein homolog; TaxID=6239 species="Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.;" source="Caenorhabditis elegans.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 39.3
  • Coverage: 634.0
  • Bit_score: 441
  • Evalue 2.40e-120

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Caenorhabditis elegans → Caenorhabditis → Rhabditida → Chromadorea → Nematoda → Metazoa

Sequences

DNA sequence
Length: 1848
ATGTCTTACATTGCAAAAGCTCTTGGATTAGGTCAAGAACCAACTCAACTTGAAAAGAAGAGAAAAGATCAAGTTCAAAACAATGCTGGAGGATTTGTTTTTAAAGTCTCTGATTTAACTTATTTGAGAAGATTCTTATGTCTTGGGACAGAGAAAGGAACTTATTATGTTAAAGAACAAAAATTAACTTTGGAAGCTGCTCAAAATGTCATGAGAATGGTTAAAGAAGGAAAAGGTTTGGAAGTCGTGAATGAAGTTAAGGATTACTCACTTCAAGGAAGAACAGCCAAACAAGATCCCATTTTGTTTTGTTTAGCTATTTGTGTTCGTTTTGGTGATGCTGAGACAAGAAAGGCAGCTTATTCTTCAATTACTCAAATTTGTAGAATTCCCACTTTTCTTTTTACCTTTGTTGAATTCTGTCAAACTATTGCAGCTTCAGAAGGAACAGGATGGGGAAGAGCTATGAGAAGAGAGATCTCAAATTGGTATAACTCACGCCCAGCAAAAAGCCTTGCTTTCACAGCAACCAAATATAAAAACAGAAATGGTTGGACTCATCGAGATATTTTAAGACTTGCTCATGTTAAACCTATTGATGAAGCTCATAACGTTGTTTTTAGATATATTCTTCAAGGTGCAGAATCACTCGAAACTTCCAAAACTAAAGTTCAAGAATTAGAATCAAACCTTGTCTTGGATCAAATTACTGATGCCTTGGAAGATTACGAACTTGTTGATCTTGAAGATGGAGAAGAGGAAGTTGAAGGTGTTAAAGTCTTGGGTGATAACATGGAAGCAGAACCAGAAGAAGAAGATGAAACTAAAAAGAAAATCAATATTGCTGTCCAAAGTCGTAAAACCCTTGAATGGCTCGAATCACTCGAAGAAGCAATGAAAATCCCACTTGAACAACCAGAAGAACTTTGTAAAGCAATTAAAAAACTCAGACTTGCAAGAGAACATATTCCAACTCAATTTTTAAATGAACTCTCAATTTGGGAAGTTTTATTGGAGAACATGCCAATCACTGCTATGATTAGAAATCTTGGAAAGATGTCTGCTATTGGTTTATTTTCATCAGAAACAAAAGGCCTCAAAAATCCTTCAACTTATTATGTTTCCAAAGTCACAGATAAGTTAAAATCAGTCGATGTTTTGAAAAAAGGAAGAGTTCATCCCTTTAATATCTTAGTTGCAATGAGAACTTATGCAAATGGACGTGGAGATAAAGGAAAATTAACTTGGACACCCAATCCCCAAATTACTCAAGGACTTGAAAAAGCATTTTACCTTTCATTCCAAGCTGTTGAACCAACCAATCAACGAGTTATTATTGGACTTGATGTCTCTGGCTCAATGTGTTCATCAATTCTTGGAAGTGAATCAGTTACCTGTAGAGATGGATCAATGGCAATGGCAATGGTTACAATGAAGAATGAACCAATGTGTAAAATGATGGCCTTTTGTGATAGATTTGTTCCTCTCCAAGGTGTCTCAAAAGATAATACACTTGATCAAAACCTTAGAGCTATCTCCTCCCTTCCATTTGGATCAACTGATTGTGCACAACCTATGATTTGGGCTTTAGAGAACAAAATTGAAGCAGACTGTTTTATGATTTTTACAGATAACGAAACTTGGGCAGGAAAAGTTCACCCATTCCAAGCACTTCAAAATTATAGAAACAAAATGAAGATCCCTCAAGCAAAATTGATCGTTGTTGGAATGTCTGTCTCTGATTTTTCTATTGCTGATCCAAATGATCCCGGAATGTTAGATGTTGCAGGATTTGATGCAAATGCTCCTGGGGTTATGAGAAACTTTATGATGGGATTACTTTCTTAA
PROTEIN sequence
Length: 616
MSYIAKALGLGQEPTQLEKKRKDQVQNNAGGFVFKVSDLTYLRRFLCLGTEKGTYYVKEQKLTLEAAQNVMRMVKEGKGLEVVNEVKDYSLQGRTAKQDPILFCLAICVRFGDAETRKAAYSSITQICRIPTFLFTFVEFCQTIAASEGTGWGRAMRREISNWYNSRPAKSLAFTATKYKNRNGWTHRDILRLAHVKPIDEAHNVVFRYILQGAESLETSKTKVQELESNLVLDQITDALEDYELVDLEDGEEEVEGVKVLGDNMEAEPEEEDETKKKINIAVQSRKTLEWLESLEEAMKIPLEQPEELCKAIKKLRLAREHIPTQFLNELSIWEVLLENMPITAMIRNLGKMSAIGLFSSETKGLKNPSTYYVSKVTDKLKSVDVLKKGRVHPFNILVAMRTYANGRGDKGKLTWTPNPQITQGLEKAFYLSFQAVEPTNQRVIIGLDVSGSMCSSILGSESVTCRDGSMAMAMVTMKNEPMCKMMAFCDRFVPLQGVSKDNTLDQNLRAISSLPFGSTDCAQPMIWALENKIEADCFMIFTDNETWAGKVHPFQALQNYRNKMKIPQAKLIVVGMSVSDFSIADPNDPGMLDVAGFDANAPGVMRNFMMGLLS*