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SCNpilot_expt_300_bf_scaffold_7435_curated_10

Organism: scnpilot_dereplicated_Actinobacteria_2

partial RP 28 / 55 BSCG 30 / 51 MC: 1 ASCG 10 / 38 MC: 3
Location: 5719..7035

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor SigA n=1 Tax=Candidatus Microthrix parvicella RN1 RepID=R4Z494_9ACTN similarity UNIREF
DB: UNIREF100
  • Identity: 61.7
  • Coverage: 439.0
  • Bit_score: 482
  • Evalue 4.80e-133
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1229780 species="Bacteria; Actinobacteria; Candidatus Microthrix.;" source="Candidatus Microthrix parvicella RN1.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 61.7
  • Coverage: 439.0
  • Bit_score: 482
  • Evalue 6.80e-133
rpoD; RNA polymerase sigma factor RpoD similarity KEGG
DB: KEGG
  • Identity: 57.2
  • Coverage: 442.0
  • Bit_score: 436
  • Evalue 1.20e-119

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Taxonomy

Candidatus Microthrix parvicella → Candidatus Microthrix → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 1317
ATGAACGACATGGCTGCTGCTCCCACCACCGATCCCTCCGCATGGGATGACCTGATCCGCCGGGCCAAGGACGACGGCTCGTTCACGGTCACGCAGGCGCAGGTGCTCGAGGTCGTCGACATCGACGTGGAGCGCCTGGACCAGGAGATCGAGGCCATCCGGCGCCTCCTCGACGAGCAGGGCATCGCCCTCGACGAGACCGTCGACGCCGAGGCCCTCGCCGCCGAGCTGGAGGCCCAGGCCGCGCACGACGCCGCCATGCACGTCAACGAGGTCCTGGCCGATCCGCTCGGCGGCATCGACCTGGCCGCCGACGACGAAGGCGGACGTCGCCGACTCCGGCTGGTCAAGACGCCTCGGGCCACCGCGGACCGCGCCGGTGGCGGCAGCGCCGATCCGGTGCGGGTGTACCTCAAGGAGATCGGCCGGGTCCCGCTGCTCACCGGACCCGAAGAGGTCGCGCTGGCCCGGCGGATCGAGGCCGGCGGGCAGGCCGGCGACCGCCTCGCCGAGCTGGAGGCCGCCGGCCGCCTCGATGAGCTCGACCTGTCGGCCCGCCGCCGGCTGGAGCGCACCTCCCGCGACGGCGAACGGGCCAAGAGCGACCTCATCCAGGCCAACCTGCGCCTCGTGGTGTCCATCGCCAAGCGCTACGTCGGCCGCGGCATGCACCTGCTGGACCTCATCCAGGAGGGCAACCTCGGCCTGATGCGTGCGGTCGAGAAGTTCGACTACACGAAGGGCTTCAAGTTCTCCACGTACGCCACGTGGTGGATCCGTCAGGCCATCACCCGGGCCATCGCCGACCAGGCCCGCACCATCCGCATCCCAGTGCACATGGTGGAGTCCATCAACAAGGTGCACCGGATCCAGCGGCAGATGATGCAGGAGCTCGAGCGGGAGCCCACCATCGAGGAGCTGGCCGCCAAGGTCGACATGACCCCCGACCGGGTCCGCGAGATCATGCGCATCTCGCAGGACCCGCTCTCGCTGGACTCGCCCGTCGGAGAGACCGACGACTCGCAGCTGTCGGACTTCATCGAGGACACGCAGGCCGACGCCCCCGCCGAGATGGCCGCCCGCAACATGCTCGGCAAGGCCGTGGTGGAGGCGCTCTCGGAGCTCAGCGACCGGGAGAAGGAGGTCGTGCGGCTGCGCTTCGGCCTCGACGACGGTCAGGCCCGGACCCTCGAAGAGGTGGGCAAGGAGTTCGGCGTCACGCGGGAGCGGATCCGCCAGATCGAGGCCAAGACGCTCGCCAAGCTGCGCAACCCCAACCGCAGCCAGAAGCTCCGCGACTACCTCGACGGCGACTGA
PROTEIN sequence
Length: 439
MNDMAAAPTTDPSAWDDLIRRAKDDGSFTVTQAQVLEVVDIDVERLDQEIEAIRRLLDEQGIALDETVDAEALAAELEAQAAHDAAMHVNEVLADPLGGIDLAADDEGGRRRLRLVKTPRATADRAGGGSADPVRVYLKEIGRVPLLTGPEEVALARRIEAGGQAGDRLAELEAAGRLDELDLSARRRLERTSRDGERAKSDLIQANLRLVVSIAKRYVGRGMHLLDLIQEGNLGLMRAVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVESINKVHRIQRQMMQELEREPTIEELAAKVDMTPDRVREIMRISQDPLSLDSPVGETDDSQLSDFIEDTQADAPAEMAARNMLGKAVVEALSELSDREKEVVRLRFGLDDGQARTLEEVGKEFGVTRERIRQIEAKTLAKLRNPNRSQKLRDYLDGD*