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SCNpilot_expt_1000_bf_scaffold_6418_curated_2

Organism: scnpilot_dereplicated_Afipia_2

partial RP 38 / 55 MC: 2 BSCG 38 / 51 MC: 1 ASCG 11 / 38
Location: comp(255..3425)

Top 3 Functional Annotations

Value Algorithm Source
Hydrophobe/amphiphile efflux-1 (HAE1) family RND transporter n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PGR0_9BRAD similarity UNIREF
DB: UNIREF100
  • Identity: 90.9
  • Coverage: 999.99
  • Bit_score: 1858
  • Evalue 0.0
Hydrophobe/amphiphile efflux-1 (HAE1) family RND transporter {ECO:0000313|EMBL:EKS41822.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 90.9
  • Coverage: 999.99
  • Bit_score: 1858
  • Evalue 0.0
mdtB1; multidrug resistance protein MdtB similarity KEGG
DB: KEGG
  • Identity: 81.9
  • Coverage: 999.99
  • Bit_score: 1688
  • Evalue 0.0

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Taxonomy

Afipia broomeae → Afipia → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 3171
ATGAATAGCAACACTGCCGAAACGAATACCGGCGGAGGCATCTCGGGCCCGTTCATCCGCTATCCGATCGCCACGTCGCTGCTGATGGCCGGCATTCTCTTTGTCGGCCTCGTTGCGTATCCTTTGCTGCCGGTTGCGCCGCTGCCGCAGGTCGACTTCCCGACCATTCAGGTTTCTGCCAGCCTTCCCGGCGCGAGCCCCGAGACCATGGCCTCGTCCGTGGCGCAACCGCTGGAGCGGCAGTTCGCGCAGATTCCCGGCGTCGCGCAGATGACGTCCACCAGTTCGCTGGGATCGACCTCGGTCACGATCCAGTTCGATCTCAACCGCAGCATCGACGGTGCGGCCAACGACGTTCAGGGCGCGATCAACGCCGCCGGCGGCCAGTTACCGAAGACGCTGCCGAGCCCGCCGACCTACCGCAAGGTCAACCCCGCAGATTCGCCAATCCTCTTGCTGTCGGTGACCTCCGACACCCTGCCGCTGATCGATGTCGACGACTATGCCGACACGCAGATGGCGCAGCAGATCAGCCAGATTTCCGGCGTCGCGCAGGTCACCATCGGCGGCCAGCAGAAACCGGCGATCCGGATTCAGATCGATCCTGCCAAGCTGGTGGCCAAGGGTCTGCAGCTTGAAGACGTGCGCAGCCAGATCGCGATCACCACCGTGGACAGCCCGAAAGGCAATATCGACGGGCCGACGCGCAGTTACACCATCTACGCCAACGACCAGTTGCCGAAGTCCAAGGACTGGAACGACGTCATCATCGCCTATCGCAATGGCGGGCCGCTCCGCATCCGCGATATCGGCCAGGCCGTGTCGGGACCGGAAGACGTCAAGCAGGCGGCATGGGCGAACGGCAAGCGCGGCGTGTTCCTCGTGATCTTCAAGCAGCCCGGCGCGAACGTCATCGACACGGTGGACAAGATCAAGGCGCAACTGCCGCGTCTGGTCGCATCGATTCCACCCTCGATTAAAGTCGATGTGCTGAGCGACCGCACCCAAACCATCCGCGCTGCCGTCGAGGACGTGCAGTACACGCTGCTGCTGACCATCGCGCTCGTGGTGATGGTGATTTTCGTCTTCCTGCGCAGCGTCTGGGCGACCGTCATCCCCAGTATCACCGTGCCGCTGGCGCTGCTCGGCGCCTGCGCACTGATGTGGGGATTCGGCTACACGCTCGACAACCTGTCGCTGATGGCGCTGACGATCTCCGTCGGCTTCGTGGTGGACGACGCCATCGTCGTGCTCGAAAATATCAGCCGCTATGTCGAGGAAGGCGACAGTCCGATGGCTGCCGCTCTCAAGGGGGCGGGCGAAATCGGCTTCACCATCGTCTCGATCAGCATTTCGCTGGTGGCCGTTCTGATTCCGCTTCTGCTGATGGGCGGCATCATCGGACGCCTGTTCCGCGAATTCGCCGTTACGCTCGCCATGACGATTTTCGTCTCGCTGATCGTGTCGCTGACGCTGACGCCGATGATGGCGTCGCGTTTCCTGAAGGCGCATACCGGCGAGGCTCAGCACGGCAAGCTGTATCAACTCAGCGAACGGTTCTTCGACGCCATGCTGCGCGGATACGAGTGGGGCCTCGACCTCGTCCTGCGCTGGCGCTTCACGACGCTGATGGTGTTCTTCGGCACCGTCGCGCTGTCCGGCTATCTGTTCGTGATCATTCCCAAGGGCTTCTTCCCGCAACAGGACGTCGGTCTGATCACCGGCATCACCGAAGGCGGACAGGATATCTCGTTCAAGGAAATGACACGCCTTCAGGAGCAGATCGGGTCCATCATCCTGAAAGATCCCGCGGTGGCCAGCATGGCCATGGCGATCGGCGGCGGCGGCAGCGCGCTGAACAACGGCCGCATGTACATTACGCTGAAGCCGCGTGACAGCCGCGACGTCACCGCGCAGCAGATCATCGCACGGCTACGGCCCCAGTTCGACAAGCTGGAGGGCGCGCGCGTCTTCATGCAGGCCGCGCAGGACGTACGCCTCGGCGGGCGCGCCACCCGCACCCAGTTTGAATATACGTTGCAAGACGCCAATCTCGACGAACTCAACACCTGGGCGCCGAAAATTCTGGAAAAGCTGAAGACCCTTCCGGAATTGCGCGACGTCGCGACCGACCAGCAGACGCAAGGCACCACCCTGACGCTGACGATCAATCGCGACACCGCATCGCGGTTCGGCATCCAGCCGCAATTGATCGACGACACGCTGTCGGATGCTTTCGGCCAGCGTCAGGTCGCGCAATACTTTACGCAGGTGAACAGCTATCACGTGATCCTTGAAATCCTGCCGGAGCTGCAGGGCGACACCGACACGCTGAACAAGATCTACATCAAATCGCCGACCACGGGCGATCAGGTGCCGCTCTCGACCTTCGTCAAGTGGTCGACGGTGCCGGTGCGCCCGCTCTCGATCAGCCATCAGGGCCAGTTCCCGGCGACGACGATCAGCTTCAATCTTGCGCAAGGTACCGCGCTCGGTCAGGCCACCAACGCCATCCAGCAGGCCGTCGCCGAACTCGGCGTGCCCGGCACCGTCAACGGCAGCTTCCAGGGCACGGCGCAGGCGTTCCAGCAATCGCTCGGCACCGTTCCACTGCTGATCCTCGCCGCGCTGATTGTCGTCTATTTGATCCTCGGCATTCTCTATGAGAGCTACATCCATCCGCTGACGATCATCTCCACCCTGCCCTCGGCGGGCGTCGGCGCTCTGGCGATGCTCATGCTGTTCGGATTCGATTTCAGCCTGATCGGCCTGATCGGCATCGTGCTGCTGATCGGAATCGTGAAGAAGAACGGCATCATGCTGGTGGACTTCGCCATCGTCGCCGAGCGCGAGGAAGGCCTCGCGCCGGAAGATGCGATCCGCAAGGCCGCGCTGATCCGCTTCCGCCCGATCATGATGACCACCATGGCCGCCCTGCTCGGCGGCGTGCCGCTGATGCTCGGCAGCGGCACCGGCTCGGAAATCCGCCAACCGCTGGGATATGCCATGGTCGGCGGTCTTGTGGTCAGCCAGGCGCTCACCCTGTTCACGACGCCGGTCGTCTATCTCTATCTCGACAAGCTCTCGAACATGCTTTCGAAGGTCGGATACGCGAAGAAAGAAACGCCGCCCGATCGTATGCGCGACGATGTCTCCGAGGCGGCGGAGTAA
PROTEIN sequence
Length: 1057
MNSNTAETNTGGGISGPFIRYPIATSLLMAGILFVGLVAYPLLPVAPLPQVDFPTIQVSASLPGASPETMASSVAQPLERQFAQIPGVAQMTSTSSLGSTSVTIQFDLNRSIDGAANDVQGAINAAGGQLPKTLPSPPTYRKVNPADSPILLLSVTSDTLPLIDVDDYADTQMAQQISQISGVAQVTIGGQQKPAIRIQIDPAKLVAKGLQLEDVRSQIAITTVDSPKGNIDGPTRSYTIYANDQLPKSKDWNDVIIAYRNGGPLRIRDIGQAVSGPEDVKQAAWANGKRGVFLVIFKQPGANVIDTVDKIKAQLPRLVASIPPSIKVDVLSDRTQTIRAAVEDVQYTLLLTIALVVMVIFVFLRSVWATVIPSITVPLALLGACALMWGFGYTLDNLSLMALTISVGFVVDDAIVVLENISRYVEEGDSPMAAALKGAGEIGFTIVSISISLVAVLIPLLLMGGIIGRLFREFAVTLAMTIFVSLIVSLTLTPMMASRFLKAHTGEAQHGKLYQLSERFFDAMLRGYEWGLDLVLRWRFTTLMVFFGTVALSGYLFVIIPKGFFPQQDVGLITGITEGGQDISFKEMTRLQEQIGSIILKDPAVASMAMAIGGGGSALNNGRMYITLKPRDSRDVTAQQIIARLRPQFDKLEGARVFMQAAQDVRLGGRATRTQFEYTLQDANLDELNTWAPKILEKLKTLPELRDVATDQQTQGTTLTLTINRDTASRFGIQPQLIDDTLSDAFGQRQVAQYFTQVNSYHVILEILPELQGDTDTLNKIYIKSPTTGDQVPLSTFVKWSTVPVRPLSISHQGQFPATTISFNLAQGTALGQATNAIQQAVAELGVPGTVNGSFQGTAQAFQQSLGTVPLLILAALIVVYLILGILYESYIHPLTIISTLPSAGVGALAMLMLFGFDFSLIGLIGIVLLIGIVKKNGIMLVDFAIVAEREEGLAPEDAIRKAALIRFRPIMMTTMAALLGGVPLMLGSGTGSEIRQPLGYAMVGGLVVSQALTLFTTPVVYLYLDKLSNMLSKVGYAKKETPPDRMRDDVSEAAE*