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SCNpilot_expt_300_bf_scaffold_250_curated_52

Organism: scnpilot_dereplicated_Alicycliphilus_1

near complete RP 50 / 55 MC: 1 BSCG 51 / 51 ASCG 13 / 38
Location: 59892..60407

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor, partial n=1 Tax=Comamonas sp. B-9 RepID=UPI0003959EB7 similarity UNIREF
DB: UNIREF100
  • Identity: 86.4
  • Coverage: 140.0
  • Bit_score: 238
  • Evalue 4.80e-60
RNA polymerase sigma factor {ECO:0000313|EMBL:KEH14324.1}; TaxID=180282 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia tsuruhatensis.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 67.1
  • Coverage: 170.0
  • Bit_score: 210
  • Evalue 2.50e-51
ECF subfamily RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 66.5
  • Coverage: 170.0
  • Bit_score: 207
  • Evalue 2.80e-51

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Taxonomy

Delftia tsuruhatensis → Delftia → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 516
ATGCCCGTCCCCGCCCCCACCCACGCCGAGGCCACCCAGGCCCTGTACCTGCAGCACCACGGCTGGCTGGTGGCGCGGCTGCGGCGCAAGCTGGGCTGCGCGTGGGACGCGGCCGATCTCGCCCAGAGCACCTTCGTGCGCGTGCTCACGGCCACCGGCCAGCGGCTCGATGAAGTGGCCGAGCCGCGCGCCTACCTCACCACCATCGCGCAGCGCCTGCTGTCCAACCACCTGCGGCGCCGGCAGATCGAGCGCGCCTACCTCGACGCCCTGGCCACCCTGCCCGAGCCCGTGGCGCCACCGCCCGACGCGCGGCTGATGGTGCTGGAGACGCTGGTCGCCATCGACCGGCTGCTCGGCGGCCTGCCCGTGGCGGCGCGCCAGGCCTTCCTGCTGTGGCGGCTGGAGGAGCTGACGCAGGAGGAGATCGCGGCGCAGCTCGGTATCTCGCGCACCAGCGTGCGCCGCCACCTGGCGGCCGCGGCCGAGCGCTGCTACTTCGCCGAAAGCCCCTGA
PROTEIN sequence
Length: 172
MPVPAPTHAEATQALYLQHHGWLVARLRRKLGCAWDAADLAQSTFVRVLTATGQRLDEVAEPRAYLTTIAQRLLSNHLRRRQIERAYLDALATLPEPVAPPPDARLMVLETLVAIDRLLGGLPVAARQAFLLWRLEELTQEEIAAQLGISRTSVRRHLAAAAERCYFAESP*