ggKbase home page

SCNpilot_expt_1000_bf_scaffold_1956_curated_14

Organism: scnpilot_dereplicated_Alphaproteobacteria_8

near complete RP 41 / 55 BSCG 41 / 51 MC: 2 ASCG 7 / 38
Location: 12150..12470

Top 3 Functional Annotations

Value Algorithm Source
TRAP transporter, DctM subunit (Fragment) n=1 Tax=Rhizobium sp. CF080 RepID=J3BDP2_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 81.1
  • Coverage: 106.0
  • Bit_score: 185
  • Evalue 3.00e-44
Membrane protein {ECO:0000313|EMBL:KFG67909.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 84.0
  • Coverage: 106.0
  • Bit_score: 189
  • Evalue 2.90e-45
ABC transporter permease similarity KEGG
DB: KEGG
  • Identity: 74.5
  • Coverage: 106.0
  • Bit_score: 178
  • Evalue 8.80e-43

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Microvirga aerilata → Microvirga → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 321
ATGGGCGTGACGATTGCCGTGTTCCTCGTGCTCGGCTGCATTCTCGAGGGCCTGCCGGCCATCGTGCTCATGGCGCCGCTCATGTTCCCGATCGCCAAGCAGCTCGGCATCAACGACATTCACTATTCGATGGTGGTGGTGACGGCCATGAACATCGGGCTCATGGCGCCGCCGATCGGGATCGGCTTCTACCTCGCCTGCAAGATCGGAAATGTGCCGCCGGACGAGGCCATCGGGGCCATCTGGCCCTATCTCGGCGCGCTCATCGTCGGACTTCTCGTGATCGCCGCCGTGCCCTGGATCTCGACCGGCTTTTTGTAA
PROTEIN sequence
Length: 107
MGVTIAVFLVLGCILEGLPAIVLMAPLMFPIAKQLGINDIHYSMVVVTAMNIGLMAPPIGIGFYLACKIGNVPPDEAIGAIWPYLGALIVGLLVIAAVPWISTGFL*