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SCNpilot_cont_300_bf_scaffold_81_curated_14

Organism: scnpilot_dereplicated_Burkholderiales_3

near complete RP 52 / 55 MC: 1 BSCG 51 / 51 ASCG 12 / 38 MC: 1
Location: comp(12501..12704)

Top 3 Functional Annotations

Value Algorithm Source
DNA-directed RNA polymerase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00054253}; Short=RNAP omega subunit {ECO:0000256|HAMAP-Rule:MF_00366};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00094401};; RNA polymerase omega subunit {ECO:0000256|HAMAP-Rule:MF_00366}; Transcriptase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366}; TaxID=1331212 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella hol similarity UNIPROT
DB: UniProtKB
  • Identity: 88.1
  • Coverage: 67.0
  • Bit_score: 124
  • Evalue 5.60e-26
DNA-directed RNA polymerase subunit omega n=11 Tax=Bordetella RepID=RPOZ_BORA1 similarity UNIREF
DB: UNIREF100
  • Identity: 88.1
  • Coverage: 67.0
  • Bit_score: 124
  • Evalue 4.00e-26
rpoZ; DNA-directed RNA polymerase subunit omega similarity KEGG
DB: KEGG
  • Identity: 88.1
  • Coverage: 67.0
  • Bit_score: 124
  • Evalue 1.20e-26

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Taxonomy

Bordetella holmesii → Bordetella → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 204
ATGGCACGTATCACCGTAGAAGACTGCTTGAAGCAAATTCCGAACCGGTTCAAACTGACCCTCGTGGCGACCTATCGCGCCCGGCAACTGGCCCAGGGCCATGCCCCCAAGCTCGATAGCAAGGACAAGCCGACCGTTACCGCGCTGCGCGAGGTCGCTTCCGGCGTGACCGGGGTGGAAATGCTGAAAAAGGTCCCCACCTGA
PROTEIN sequence
Length: 68
MARITVEDCLKQIPNRFKLTLVATYRARQLAQGHAPKLDSKDKPTVTALREVASGVTGVEMLKKVPT*