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SCNpilot_expt_500_p_scaffold_263_curated_76

Organism: scnpilot_dereplicated_Chlamydia_1

near complete RP 50 / 55 BSCG 47 / 51 MC: 1 ASCG 12 / 38 MC: 2
Location: 68855..69973

Top 3 Functional Annotations

Value Algorithm Source
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=1444712 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia sp. 'Rubis'.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 372.0
  • Bit_score: 730
  • Evalue 1.60e-207
rpoA; DNA-directed RNA polymerase subunit alpha; K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] similarity KEGG
DB: KEGG
  • Identity: 71.8
  • Coverage: 372.0
  • Bit_score: 537
  • Evalue 2.60e-150
DNA-directed RNA polymerase subunit alpha n=1 Tax=Neochlamydia hartmannellae RepID=S4TLC1_9CHLA similarity UNIREF
DB: UNIREF100
  • Identity: 74.8
  • Coverage: 373.0
  • Bit_score: 560
  • Evalue 1.20e-156

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Taxonomy

Chlamydia sp. 'Rubis' → Chlamydia → Chlamydiales → Chlamydiia → Chlamydiae → Bacteria

Sequences

DNA sequence
Length: 1119
ATGTCAGTGAAGTACGGCAAGTTCGAAATGCCCCAAAAAATTACCATTGCGGAGGAGAGCACGAATTTTTCCCGTTTTATTGCAGAACCTTTTGAAAGAGGCTTTGGTCATACAATTGGAAACTCAATGCGCAGAATGATGCTTTCCTCACTTGAAGCACCAGCAATTGTATCTGTGCGCATCGAAGGTGTTCCACATGAGTATATGGCAATAGAAGGTATTATTGAGGATATGACAAACATCATCCTTAATTTTAAAGGCGCTTTACTTAGAAAAATTACAATGGATGACGATCAATACGCTCGTCAAATGAGAATCGTCACTTCTACGATTGAAGTTTCACAAGACGATTTAGATAAAAACAACGGTCAATATGAAGTTACTTTAGGTGATTTGGTTAAAGATGGTATTTATGAAGTAGTAAATCCTTCTCTTCATATCTTTACTATTACTAAACCAATGCGCAAGCAAGTGGATTTGAGAGTAGCAATCGGAAGAGGATATGTTCCATCAGAGCGTCTATCTATTCATGATAAAGCTCCAGATGAAATCTTGATTGATGCTTCGTTTTCACCAGTTAGACTTGTAAACTATTTTGTAGAAAATACACGAGTTGGACAAGATACTGATTTTGATAGACTTATCATAGAAGTAACAACCGACGGCCGCGTTACTCCTTCTGAAGCTTTATCTTTTGCAGCCCAAATTGGTGCAAAACATTTTGAAGTATTCAATAAAGTTAAATCACACGTGTTAACTTTTGATGAAGGATTTAATGAAAGTGATAGTGATATAGATGAAATGATGGAGAAATTAGCTCTTCGCATTGACGAAATAGAGTTGTCTGTACGTTCAACAAATTGTCTACAAGGCGCTAATATTGAAACTATTGCAGAATTAGTTTCTATTCCTGAAAAGAAAATGCTTGGATTTAGAAATTTCGGTAAAAAATCATTAAACGAAATTAAAGCCAAGTTACACGAAATGGGACTAAGTCTTGGTATGAATTTAGAGCCTTACGGAATCAAACCAGAAGACGATGTCAAAGAAGTCGTTCGTAGATATCACGAAGAAAAAAAAATTAAGAAAGATATGTCAAAGGTAGAAGACGTAGGTTAG
PROTEIN sequence
Length: 373
MSVKYGKFEMPQKITIAEESTNFSRFIAEPFERGFGHTIGNSMRRMMLSSLEAPAIVSVRIEGVPHEYMAIEGIIEDMTNIILNFKGALLRKITMDDDQYARQMRIVTSTIEVSQDDLDKNNGQYEVTLGDLVKDGIYEVVNPSLHIFTITKPMRKQVDLRVAIGRGYVPSERLSIHDKAPDEILIDASFSPVRLVNYFVENTRVGQDTDFDRLIIEVTTDGRVTPSEALSFAAQIGAKHFEVFNKVKSHVLTFDEGFNESDSDIDEMMEKLALRIDEIELSVRSTNCLQGANIETIAELVSIPEKKMLGFRNFGKKSLNEIKAKLHEMGLSLGMNLEPYGIKPEDDVKEVVRRYHEEKKIKKDMSKVEDVG*