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scnpilot_p_inoc_scaffold_6000_curated_1

Organism: scnpilot_dereplicated_Hydrogenophaga_1

near complete RP 50 / 55 MC: 1 BSCG 49 / 51 MC: 3 ASCG 12 / 38
Location: 1..432

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase subunit sigma-24 n=1 Tax=Cupriavidus sp. WS RepID=UPI00036F648B similarity UNIREF
DB: UNIREF100
  • Identity: 66.4
  • Coverage: 134.0
  • Bit_score: 174
  • Evalue 9.20e-41
FecI-like sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 65.2
  • Coverage: 132.0
  • Bit_score: 168
  • Evalue 2.10e-39
Sigma-24 (FecI-like) {ECO:0000313|EMBL:ABE44836.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 65.2
  • Coverage: 132.0
  • Bit_score: 168
  • Evalue 9.30e-39

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Taxonomy

Polaromonas sp. JS666 → Polaromonas → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 432
CCCGAGGACCAGCGGCGCCTGCTGAGCGCCTTCGCCGAGGCGGCGTCGCGCGGCGACATCAGCGGCCTGAAGGCCGTGCTGGCCGAGGACGCGCGGCTCGTCAGCGACGGCGGTGGCAAGGTGCCCAGCTTTGGCGTGCCCCTGCTGGGCGGCCAGCGCATCGCGCAGCTCTATCTGGCCACCAGCCTGCGCTTCGCGGGCCGCGTGCACTACGAACTGGCCCCGCTCAACGGCGAATGGGGCCTGCTGCGCTTCATCGACGGCGCGCTGGAATCGGCGCAGGCGCTGCGGATCGAGGACGGCCGCGTCGTGGGCATCCAGGTGCAGCGCAACCCCGACAAGCTGCGGCACATCGCGCAGGCGCTGGGCCACGCGCAGCTGGACCCATCGGTCACAAACTACGTCACAGGAGACGGCGCCGCTTCGTCTTGA
PROTEIN sequence
Length: 144
PEDQRRLLSAFAEAASRGDISGLKAVLAEDARLVSDGGGKVPSFGVPLLGGQRIAQLYLATSLRFAGRVHYELAPLNGEWGLLRFIDGALESAQALRIEDGRVVGIQVQRNPDKLRHIAQALGHAQLDPSVTNYVTGDGAASS*