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scnpilot_p_inoc_scaffold_1544_curated_5

Organism: scnpilot_dereplicated_Hydrogenophaga_1

near complete RP 50 / 55 MC: 1 BSCG 49 / 51 MC: 3 ASCG 12 / 38
Location: 5232..5951

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor FliA n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MHW0_9BURK similarity UNIREF
DB: UNIREF100
  • Identity: 95.4
  • Coverage: 239.0
  • Bit_score: 454
  • Evalue 5.90e-125
RNA polymerase sigma factor FliA {ECO:0000256|HAMAP-Rule:MF_00962}; RNA polymerase sigma factor for flagellar operon {ECO:0000256|HAMAP-Rule:MF_00962}; Sigma F {ECO:0000256|HAMAP-Rule:MF_00962}; Sigma-28 {ECO:0000256|HAMAP-Rule:MF_00962}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 95.4
  • Coverage: 239.0
  • Bit_score: 454
  • Evalue 8.30e-125
RNA polymerase sigma-28 subunit FliA/WhiG similarity KEGG
DB: KEGG
  • Identity: 77.8
  • Coverage: 239.0
  • Bit_score: 376
  • Evalue 6.40e-102

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Taxonomy

Hydrogenophaga sp. PBC → Hydrogenophaga → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 720
ATGTACACCGCCAAAGGCACGCTCAACCGCGAGGACCAGCTGCGCAAGTACAGCCCCCTGGTCCGTCGCCTGGCGCACCACATGATCGCCAAGCTGCCCCCGAGCGTGGAGCTCGACGACCTGATCCAGGTCGGCATGATCGGCCTGACCGAGGCGATTGCCCGCTACGAGCCCTCGCAGGGTGTGCAGTTCGAGACCTTCGCGAGCCAGCGCATCCGCGGCGCCATGATCGACGAGCTGCGCGACGGCGACTGGATGAGCCGCGGCTCGCGCAAGAGCCAGAAGGACATCGAGCAGGCCGTGCACCGCCTGCAGCAGAAGCTGCACCGCCCGCCGCGCGAGAGCGAGATCGCGGCCGAGATGGGCCTGACCCTGGCCGACTACCAGACCCTGCTGGCCAAGGTGCGCGGCACGCAGCTGGTGTACCTGGAGGACATCAGTGGCGGCGGTGGCGACGACGAGGACGGTTTCCTGGACCGCCACATGGGCGACCACGAGGCCGACCCCTCATCCGTGCTGCAGGACCAGCGCATGCGCATGGCCCTGGTGGGGGCGATCAAAACCCTGCCCGAGCGCGAGCAGCACATCATGAGCATGTACTACGAGCACGACATGAACCTGAAGGAAATCGCCGCCGTGCTCGGCGTGACCGAATCGCGCGTGTGCCAGCTGCACAGCCAGTCGATCGCGCGGCTGCGCTCGAAGCTGCGGGAGCATTGA
PROTEIN sequence
Length: 240
MYTAKGTLNREDQLRKYSPLVRRLAHHMIAKLPPSVELDDLIQVGMIGLTEAIARYEPSQGVQFETFASQRIRGAMIDELRDGDWMSRGSRKSQKDIEQAVHRLQQKLHRPPRESEIAAEMGLTLADYQTLLAKVRGTQLVYLEDISGGGGDDEDGFLDRHMGDHEADPSSVLQDQRMRMALVGAIKTLPEREQHIMSMYYEHDMNLKEIAAVLGVTESRVCQLHSQSIARLRSKLREH*