ggKbase home page

SCNpilot_cont_300_bf_scaffold_9790_curated_3

Organism: scnpilot_dereplicated_Microbacterium_2

near complete RP 51 / 55 BSCG 50 / 51 MC: 3 ASCG 11 / 38
Location: 738..4334

Top 3 Functional Annotations

Value Algorithm Source
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=400772 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium ginsengisoli.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 83.7
  • Coverage: 999.99
  • Bit_score: 1959
  • Evalue 0.0
mfd; transcription-repair coupling factor; K03723 transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-] similarity KEGG
DB: KEGG
  • Identity: 83.0
  • Coverage: 999.99
  • Bit_score: 1950
  • Evalue 0.0
transcription-repair coupling factor n=1 Tax=Microbacterium yannicii RepID=UPI0002E99FBC similarity UNIREF
DB: UNIREF100
  • Identity: 84.8
  • Coverage: 999.99
  • Bit_score: 2018
  • Evalue 0.0

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Microbacterium ginsengisoli → Microbacterium → Micrococcales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 3597
GTGACAGTTCCCGGGATCGCGCGCGCCCTCGCGCAGTCCGACACCCTGCGGGACGCGCTGGTCGCCGCCCCCGTCGACGCCGACTTCTCGCTCGTCGAGGGGGTCGACGCTCCGCTCATCGCGGGGCTCATCGACCGGAGAGCCCGCGCGGGCTCGCCCGCCGCCGTGCTCGTCATCTCACCGACCGGCCGTCGTGCAGACGCCATCGGGCCGGCGCTGGAGGCCCTCGTGCCCGGTGCCCAGGTCATGCACTTCCCGGCGTGGGAGACGCTCCCGCACGAGCGCCTGAGCCCGAGCGCCGAGACCGTGGGGCAGCGGCTCGACGTGCTGCGCAGGGTGGCGGAATGGGACGGCGTCGCGCCGCTCATCGTGACCGCGTCGGTGCGGTCGGCGCTGCAGCCCATCGCGGCGGGTCTCACGGACGCGGCGCCGATCCGGCTGACCGTCGGCGGCCGCGACCACGAGCTGACCGCGGTGAGCGCACAGCTGGTGGAGCGCGCCTACCACCGCGTCGACATGGTGTCGCGGCGCGGCGAGTTCGCAGTGCGCGGCGGCATCCTCGACGTGTTCCCGCCGATCGCCGACCACCCGTACCGCGTGGAGTTCTTCGGCGACGAGGTCGACCAGATCCGTTCGTTCTCCGTTGCGGACCAGCGGAGCCTCCCCGGTGAGATCCGGGAGGTGGAGCTGCTCGCCAGCCGCGAGCTCCTCCTCACGGAAGCCGTGCGCGCCCGTGCGCGCGGGCTGATGGACGACTTCCCCGGCCTGCGCGGGATGCTGGAGCGGATGGCCGAGGGCATCCCGGCCGACGGCATGGAGTCGCTCACCCCGGCCCTGGTGGACCGCGTCGTCACGCTCGTCGACTACCTGCCGAAGGGTGCCGCGGTCGCGCTGCTCGACCCCGAGCGCTCGGTCACCCGCGCGATGACGCTGTCGGACACGAACCGCGAGTTCCTCGAGGCGGCCTGGAGCGCCGCCACGGCCGGCGCACAGACCCCCATCGACCTCGGAGCGGGCGACTTCGTCAGCCTCGGGCGCCTGCGTGAGGTGGCACGCGACCGCGGCGGGGTGTGGTGGAGCCTCAGCGCCTTCGACTCGGGTGCGGCGGATGCCGCGGCCGAGGGGCTCGCCGAGCGGGACGACACGACGGCCATCCGCATCGCGGCATCGGGCGTGCCCTCGTTCCACGGCAACGTCGACGGAGCGACCGCGCACATCGCCGAGCTCCTCGCCTCGGGGTGGCGTGTCGTGGTCGCGGCATCCGGAGCCGGGCTCGCCGACCGCGCGCGCGACGTGCTCGCCGAACGCGGGATCGCGGCGCGTCGCGTCGATCAGGTGCTGGAGCCGCCGGAGCCGGGTGTCGTGCACGTGGTCGCCGCGACGCTCGAGCGCGGCTTCGAGGCGCCCGACGCGCAGCTCGCCGTCCTGACCGAGACCGAGTTCTACGGGCGCACGATCGGCAGCGACGCGCGCATCGTGAAGAAACTGGCGTCTCGCCGTCGCAACGTCGTCGACCCGCTGCAGCTCAAGGCGGGCGACTACGTGGTCCACGCGACCCACGGCATCGGCCGGTTCGTCGAGCTCACGCAGCGCGAAGTGTCCAGCGGCGGTCGCCACGCGGTGAAGAGCGTGCGCGAGTACCTGGTGCTCGAGTACGCGCCGAGCAAACGCGGCTACCCCGGCGACAAGCTGTACGTCCCCACCGATCAGCTCGACCTGCTGTCGCGCTACGTCGGCGGCGAGGCGCCCGTCCTGTCGAAGATGGGCGGGAGCGACTGGGCGCAGGCCAAGGGCCGCGCGCGCAAGGCGGTGCGCGACATCGCCGTGGAGCTGGTGAAGCTCTACTCGGCGCGCATGGCGTCCAAGGGGCACGCGTTCGGCCCGGACACCCCGTGGCAGCGCGAGCTGGAGGAGGCGTTCCCCTTCGCCGAGACGCCCGATCAGCTGCAGACCGTCGACGAGATCAAGGCCGACATGGAGAAGCCGATCCCGATGGACCGCCTCCTCTCCGGCGACGTCGGGTTCGGGAAGACCGAGGTCGCGGTGCGCGCCGCCTTCAAGGCCATCCAGGACGGCAAGCAGGTCGCGATGCTCGTGCCCACGACGCTCCTCGTGAAGCAGCACCTCGACACGTTCACCGAGCGGTTCGCCGGCTTCCCCGTGAAGGTGCGGCCGCTCTCGCGGTTCCAGACCGACAAGGAGGCGCGCGAGACGCTCGCGGGCCTCACCGACGGCACGGTCGACATGGTGATCGGGACCCACCGCATCCTCACGGAGAAGGTGATCTTCAAGGACCTCGGCCTGATGATCATCGACGAGGAGCAGCGGTTCGGGGTCGAGCACAAGGACCAGCTGAAGAAGCTCAAGACCAACGTCGACATCCTCGCGATGAGTGCGACGCCGATCCCGCGCACGCTCGAGATGGCGGTCACCGGCATCCGCGAGATGTCGACGCTGCAGACGCCGCCGGAGGATCGCCATCCGATCCTGTCGTACGTCGGGCCGCGCAACGACAAGCAGATCGCCGCCGCCGTCCGGCGCGAGCTGCTGCGTGAAGGACAGGTCTTCTACGTCCACAACCGGGTGCAGTCGATCCAGCGGGTCGCCGCCGAACTCGCCGAGCTCGTGCCCGAGGCGCGCATCGCGGTCGCGCACGGGCAGATGGGCGAGCACGCCCTGGAGCAGGTCGTCGACGACTTCTGGGAGCGCCGAGCCGACGTGCTGGTGTGCACGACGATCGTCGAGACCGGGCTCGACATCTCCAACGCGAACACGATCATCATCGACCGCGCTGACAAGTACGGGCTGTCGCAGCTGCATCAGCTCCGCGGACGCGTGGGGCGCGCCCGCGAGCGCGCATACGCCTACTTCCTGTACGACGAGCAGAAGCCGCTGTCCGAGACGGCCGCCGACCGCCTCGAGACGATCGCCGTCAACAACGACCTGGGCTCGGGGATGCAGGTGGCGCTGAAGGACCTCGAGTTGCGCGGGGCCGGGAACCTCCTCGGCGCGGAGCAGGCCGGCCACATCGCCGGCGTCGGGTTCGATCTCTATCTGCGGATGATCGGCGAGGCCGTCGCGACATTCCGCGGCGACGAGACAGAGTCGCCCGTCGAACTGCGGCTCGAGCTGCCCGTGCAGGCGCGCATCCCGGAGTCGTACATCGACAGCGAGCGGCTCCGGCTCGAGGCGTACCAGAAGCTCTCGGCGGCGGCATCTGCGACCGCGAAGGACGATGCCATCGACCTCGTGGTCGACGAACTCCGCGACCGCTATGGCGAGCCGCCCGCCGAGGTGGAGGGGCTGCTCGCGATCGCCCGCCTGCGCCGCCGCGCCGCCCAGGCGGGGCTGACGGACGTCGTCGCGATGGGCCCGAACCTGCGCATCGCCCCCGCTCGGCTGCCCGACTCGATGCGTGTGCGCCTGCAGCGGCTCCACCCGAAGGCGAAGCTGCTCTCCGGCGGCGAGGCGCTCGTGGTTCCGCTCCCCGGGGCGGGAGGCGAGCCGCTCGGCGACCCCGAGCTGATCGCCTGGGTGGGTCAGCTGCTCGAGCAGCTCTGGCCCGCACCGGCCCCCGCGCCTGCCGACGCCTCGTAG
PROTEIN sequence
Length: 1199
VTVPGIARALAQSDTLRDALVAAPVDADFSLVEGVDAPLIAGLIDRRARAGSPAAVLVISPTGRRADAIGPALEALVPGAQVMHFPAWETLPHERLSPSAETVGQRLDVLRRVAEWDGVAPLIVTASVRSALQPIAAGLTDAAPIRLTVGGRDHELTAVSAQLVERAYHRVDMVSRRGEFAVRGGILDVFPPIADHPYRVEFFGDEVDQIRSFSVADQRSLPGEIREVELLASRELLLTEAVRARARGLMDDFPGLRGMLERMAEGIPADGMESLTPALVDRVVTLVDYLPKGAAVALLDPERSVTRAMTLSDTNREFLEAAWSAATAGAQTPIDLGAGDFVSLGRLREVARDRGGVWWSLSAFDSGAADAAAEGLAERDDTTAIRIAASGVPSFHGNVDGATAHIAELLASGWRVVVAASGAGLADRARDVLAERGIAARRVDQVLEPPEPGVVHVVAATLERGFEAPDAQLAVLTETEFYGRTIGSDARIVKKLASRRRNVVDPLQLKAGDYVVHATHGIGRFVELTQREVSSGGRHAVKSVREYLVLEYAPSKRGYPGDKLYVPTDQLDLLSRYVGGEAPVLSKMGGSDWAQAKGRARKAVRDIAVELVKLYSARMASKGHAFGPDTPWQRELEEAFPFAETPDQLQTVDEIKADMEKPIPMDRLLSGDVGFGKTEVAVRAAFKAIQDGKQVAMLVPTTLLVKQHLDTFTERFAGFPVKVRPLSRFQTDKEARETLAGLTDGTVDMVIGTHRILTEKVIFKDLGLMIIDEEQRFGVEHKDQLKKLKTNVDILAMSATPIPRTLEMAVTGIREMSTLQTPPEDRHPILSYVGPRNDKQIAAAVRRELLREGQVFYVHNRVQSIQRVAAELAELVPEARIAVAHGQMGEHALEQVVDDFWERRADVLVCTTIVETGLDISNANTIIIDRADKYGLSQLHQLRGRVGRARERAYAYFLYDEQKPLSETAADRLETIAVNNDLGSGMQVALKDLELRGAGNLLGAEQAGHIAGVGFDLYLRMIGEAVATFRGDETESPVELRLELPVQARIPESYIDSERLRLEAYQKLSAAASATAKDDAIDLVVDELRDRYGEPPAEVEGLLAIARLRRRAAQAGLTDVVAMGPNLRIAPARLPDSMRVRLQRLHPKAKLLSGGEALVVPLPGAGGEPLGDPELIAWVGQLLEQLWPAPAPAPADAS*