ggKbase home page

scnpilot_p_inoc_scaffold_607_curated_50

Organism: scnpilot_dereplicated_Planctomycetales_1

near complete RP 50 / 55 MC: 2 BSCG 50 / 51 MC: 1 ASCG 14 / 38 MC: 3
Location: comp(43431..44141)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AXA4_RUBXD similarity UNIREF
DB: UNIREF100
  • Identity: 43.6
  • Coverage: 243.0
  • Bit_score: 168
  • Evalue 1.10e-38
RNA polymerase sigma-28 subunit; K03086 RNA polymerase primary sigma factor similarity KEGG
DB: KEGG
  • Identity: 43.6
  • Coverage: 243.0
  • Bit_score: 168
  • Evalue 3.40e-39
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 43.6
  • Coverage: 243.0
  • Bit_score: 168
  • Evalue 1.50e-38

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Rubrobacter xylanophilus → Rubrobacter → Rubrobacterales → Rubrobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 711
ATGACGGGCCGCAACGCGACGGTCGTCGCGAACATGGGCCTGGTCCACGAGATGGCGAAGGGCTTCCGGGGCCGGGGGCTCGACGTCGAAGACCTGGTCAACGAGGGGGCCATCGGCCTGATGCGGGCGGCCGAGAAGTTCGACCCCGAGCGGGGGTTCCGGTTCAGCACCTACGCGATGTACTGGATCAGGCAGGCCATGCAGATCGCCGTCGCCAACAAGGGCCGCACGGTCCGCGTCCCGGTCGGCACCCTGAAGCTGCTGGGCGACTGGCGGCGATCCGAGCGGGCCGTCTACCTGGCGACGGGCCGGCGCCCGGGCTTCGACGAGGTCGCCGACTGCATGGCGCTCGACGACGAGGCCAGGGTCCGCGTGGCGAAGGCCCTGGCGGCGTCCCGCGCGAGCCTGGGGAGTGAGGCCGTGGAAGTCGAGGGCGAAGGGCCGACGGCCGAGGCTTGGGACGACGAGGATCGCGCCGAGCTGGACGCGCTGATGTCGGGCCTGACCGATCGCCAGCGCGAGGTCGTATCGGCCCGGTTCGGGATCGACGGCCGCGAGCCGATGACGCTGGCCGAGGTCGGCGACGACCTGGGCGTCAGCCGCGAGCGCGTCCGGCAGATCGAGGCTGACGCCCTCCGCCGCATGGGCCTGGAGAGGTCCGGCGAGCGAGGGGCGGTGGCGTGTCGGTCGGCCGCGGGGAGGGGACGATGA
PROTEIN sequence
Length: 237
MTGRNATVVANMGLVHEMAKGFRGRGLDVEDLVNEGAIGLMRAAEKFDPERGFRFSTYAMYWIRQAMQIAVANKGRTVRVPVGTLKLLGDWRRSERAVYLATGRRPGFDEVADCMALDDEARVRVAKALAASRASLGSEAVEVEGEGPTAEAWDDEDRAELDALMSGLTDRQREVVSARFGIDGREPMTLAEVGDDLGVSRERVRQIEADALRRMGLERSGERGAVACRSAAGRGR*