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SCNpilot_expt_1000_bf_scaffold_1748_curated_5

Organism: scnpilot_dereplicated_Rhizobiales_12

near complete RP 44 / 55 MC: 2 BSCG 46 / 51 MC: 5 ASCG 10 / 38 MC: 2
Location: comp(3688..4461)

Top 3 Functional Annotations

Value Algorithm Source
Putative transmembrane anti-sigma factor n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CBQ4_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 60.7
  • Coverage: 257.0
  • Bit_score: 306
  • Evalue 2.80e-80
Putative transmembrane anti-sigma factor {ECO:0000313|EMBL:EYR78720.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 60.7
  • Coverage: 257.0
  • Bit_score: 306
  • Evalue 3.90e-80
hypothetical protein similarity KEGG
DB: KEGG
  • Identity: 59.7
  • Coverage: 258.0
  • Bit_score: 297
  • Evalue 3.10e-78

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 774
ATGAAACCCGTTGATCCCGTGCTCGACACCGATCTTTCCGCCTATGTCGACAACCAGCTCGACATTAACCGCCGCATTGAGGTCGAGGCCTATCTTTCGGAAAATCCCGTGATTGCCGCGCAGGTGATGGCCGATCTCAGCCTCAAGGGCGAGTTGCGGCTGGCGCTGGCCGATCAGCGGTCTTCGGTGCGGCCGCAGACGCGCGACGCGGCGCGGCGGCTGGAATCGGCGCTGTCGCGCGGCCTCTTCGTCGCCGCGTTCCGCCGGGCGGCGGCCATCGTGCTTCTGGTCGGCGCCGGCTGGGTGGCGAACGCCCATTTCGGCCCCTTCGGCGCGACCCAGGTAATTGCCTCCGTGCAGCCCCCGCCCTTCGTCGAGGAGGCGGTGCGCGCCCACCAGACGGCGGTGCTTCGCGAAACCATGCCGTCGCAGGCGGAGATATCCGCCTATGACCCCGCCGACATCCGCGCCGCGACCGGCATCGTCATGCCCGAGATCCCCACGGACTGGAAGGTCATCGACGTACAGGTCTTCCCCTCCGCATTCGGGCCGAGCGTGGAGATGGCCGTCGCGCCGGCCGCAAACGAGGTGCTGTCACTCTTCGCCGTCCGTCCCGGCAGCTTTGCCGTGCAGAAGGCGCTGCCGATGGGCGTGGGGACGACGCAATCCTCATACTGGCAGATCGGCGAGGTCGCCTATGCCCTCGTCTCCAGTTCCCGCGATGCCGGCGATCTCAACGGCATGGCCGAAAAACTCGCCGCCTCGCTCTATTGA
PROTEIN sequence
Length: 258
MKPVDPVLDTDLSAYVDNQLDINRRIEVEAYLSENPVIAAQVMADLSLKGELRLALADQRSSVRPQTRDAARRLESALSRGLFVAAFRRAAAIVLLVGAGWVANAHFGPFGATQVIASVQPPPFVEEAVRAHQTAVLRETMPSQAEISAYDPADIRAATGIVMPEIPTDWKVIDVQVFPSAFGPSVEMAVAPAANEVLSLFAVRPGSFAVQKALPMGVGTTQSSYWQIGEVAYALVSSSRDAGDLNGMAEKLAASLY*