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SCNpilot_expt_1000_bf_scaffold_2026_curated_16

Organism: scnpilot_dereplicated_Rhizobiales_12

near complete RP 44 / 55 MC: 2 BSCG 46 / 51 MC: 5 ASCG 10 / 38 MC: 2
Location: 14545..15255

Top 3 Functional Annotations

Value Algorithm Source
Nopaline transport system permease protein NocM n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CPW3_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 90.3
  • Coverage: 227.0
  • Bit_score: 411
  • Evalue 7.40e-112
Amine acid ABC transporter, permease protein His/Glu/Gln/Arg/opine family {ECO:0000313|EMBL:EYR79370.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 90.3
  • Coverage: 227.0
  • Bit_score: 411
  • Evalue 1.00e-111
polar amino acid ABC transporter inner membrane subunit; K10019 octopine/nopaline transport system permease protein similarity KEGG
DB: KEGG
  • Identity: 77.6
  • Coverage: 223.0
  • Bit_score: 344
  • Evalue 3.50e-92

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 711
ATGGATTTCGAACTCGTCCGCCTCGCCGTTCCGACGCTTGCCAAGGGCCTGTGGCTCACCGCCCTGCTGACCGTTACCTCCGTCGCCATCGGCTTCAATCTCGGGCTGGCGCTCGCCGTCATGCGCCTGTCGAAGAACAGGCTGCTGAGCGGCTTCGCCAAGGGCTACAGCACCGTGTTTCGCGGCACGCCGCTGCTCGTCCAGCTCTTCCTGTTCTATTACGGCCTCGGTCAGCTGCCCTTCGTGCGCGACAATCCCGTGCTGTGGTGGATCATCGGCGACGGCGCCCATTGCGCGGTGATGGCGCTGGCGCTCAACACCGCCGCCTATACCTCGGAAATCCTGCGCGGCGGCCTGCTGTCGATCCCGGCCGGGTTGATGGAGGCGGCGCAGGCCTGCGGCATGTCGCGGCTCCTGTGCTTCCGCCGCATCGCCTTTCCGCTGGCCATCCGCCAGGCGCTGCCGGCCTATGGCAACGAACTGGTCCTCGTCGTCAAGGGCACCAGCCTCGCCTCGACGATCACGGTGCTCGAAATCACCGGCCACGCGAAGCGGCTGATGAGCCAGACCTACGCGATCCTCGAGATCTTCGCCATCGCCGGCTTGCTCTATCTGTTCATCAATCTGGTGCTCATCACACTCATCCGGCTGCTTGAGGCACGACTGACCCGTTACCTGCCCTATCGATCCGGGGCGAGGCGCGCCGCGTGA
PROTEIN sequence
Length: 237
MDFELVRLAVPTLAKGLWLTALLTVTSVAIGFNLGLALAVMRLSKNRLLSGFAKGYSTVFRGTPLLVQLFLFYYGLGQLPFVRDNPVLWWIIGDGAHCAVMALALNTAAYTSEILRGGLLSIPAGLMEAAQACGMSRLLCFRRIAFPLAIRQALPAYGNELVLVVKGTSLASTITVLEITGHAKRLMSQTYAILEIFAIAGLLYLFINLVLITLIRLLEARLTRYLPYRSGARRAA*