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SCNpilot_expt_1000_bf_scaffold_6196_curated_5

Organism: scnpilot_dereplicated_Rhizobiales_12

near complete RP 44 / 55 MC: 2 BSCG 46 / 51 MC: 5 ASCG 10 / 38 MC: 2
Location: comp(3412..3735)

Top 3 Functional Annotations

Value Algorithm Source
Type IV secretory pathway, VirB2 component n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CHH5_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 66.4
  • Coverage: 107.0
  • Bit_score: 139
  • Evalue 1.40e-30
Type IV secretory pathway, VirB2 component {ECO:0000313|EMBL:EYR82772.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 66.4
  • Coverage: 107.0
  • Bit_score: 139
  • Evalue 2.00e-30
conjugal transfer protein trbc; K03197 type IV secretion system protein VirB2 similarity KEGG
DB: KEGG
  • Identity: 42.0
  • Coverage: 88.0
  • Bit_score: 70
  • Evalue 4.40e-10

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 324
ATGACAATTTCCACGATGAAGCCGCGCCTGCGCGGCAAGGCTTTCCTGTCGCTGGCGGTCCTTGCGACCTCCATCGCCCTGGTCCCGGAACTGGCCTATGCGCAATCGGCCGCGCCGGTCGAAGGCATCCTTGAATGGTTCACCGGCGTGCTGCAGGGCAGCGTTGCCCGGTCACTCGCCATCATCGCCGTCTGCTTCCTCGGCTTCCTGTTCCTGACCGGGCGCATGGCCTGGCAGGGCGCGATTTCTATCGTCATCGGCATCGCGATCATCTTCGGCGCCGCCGAACTGGTCGACGCCATGAAGGCGGCCGGGGGTGTTTGA
PROTEIN sequence
Length: 108
MTISTMKPRLRGKAFLSLAVLATSIALVPELAYAQSAAPVEGILEWFTGVLQGSVARSLAIIAVCFLGFLFLTGRMAWQGAISIVIGIAIIFGAAELVDAMKAAGGV*