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SCNpilot_expt_1000_bf_scaffold_1565_curated_26

Organism: scnpilot_dereplicated_Rhizobiales_12

near complete RP 44 / 55 MC: 2 BSCG 46 / 51 MC: 5 ASCG 10 / 38 MC: 2
Location: 23668..23967

Top 3 Functional Annotations

Value Algorithm Source
Integration host factor subunit beta n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=IHFB_AGRVS similarity UNIREF
DB: UNIREF100
  • Identity: 96.0
  • Coverage: 99.0
  • Bit_score: 196
  • Evalue 9.20e-48
ihfB; integration host factor subunit beta; K05788 integration host factor subunit beta similarity KEGG
DB: KEGG
  • Identity: 96.0
  • Coverage: 99.0
  • Bit_score: 196
  • Evalue 2.90e-48
Integration host factor subunit beta {ECO:0000255|HAMAP-Rule:MF_00381}; Short=IHF-beta {ECO:0000255|HAMAP-Rule:MF_00381};; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 96.0
  • Coverage: 99.0
  • Bit_score: 196
  • Evalue 1.30e-47

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Taxonomy

Agrobacterium vitis → Agrobacterium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 300
GTGATAAAGTCGGAGCTGGTACAGATCGTTGCAGCGCGTAACCCGCATCTCTATCACCGCGACGTGGAAAACATCGTCAATGCCGTCCTTGATGAAATCACCGACGCGCTGGCGGCGGGAAATCGCGTCGAATTGCGCGGTTTCGGCGCTTTTTCGGTGAAGAACCGCCCGTCACGCTCGGGTCGCAACCCCCGCACCGGCGACACCGTCTTCGTCGAGGAAAAGTGGGTGCCGTTCTTCAAGACCGGCAAGGAACTGCGCGAACGCCTCAATCCGAACATGGAAGATGAGGACGATTGA
PROTEIN sequence
Length: 100
VIKSELVQIVAARNPHLYHRDVENIVNAVLDEITDALAAGNRVELRGFGAFSVKNRPSRSGRNPRTGDTVFVEEKWVPFFKTGKELRERLNPNMEDEDD*