ggKbase home page

SCNpilot_expt_1000_bf_scaffold_2820_curated_9

Organism: scnpilot_dereplicated_Rhizobium_2

partial RP 36 / 55 MC: 4 BSCG 36 / 51 MC: 5 ASCG 9 / 38 MC: 1
Location: comp(10667..11827)

Top 3 Functional Annotations

Value Algorithm Source
Spermidine/putrescine ABC transporter n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JAH4_AGRRK similarity UNIREF
DB: UNIREF100
  • Identity: 87.0
  • Coverage: 386.0
  • Bit_score: 716
  • Evalue 1.80e-203
spermidine/putrescine ABC transporter; K02055 putative spermidine/putrescine transport system substrate-binding protein similarity KEGG
DB: KEGG
  • Identity: 87.0
  • Coverage: 386.0
  • Bit_score: 716
  • Evalue 5.50e-204
Spermidine/putrescine ABC transporter substrate-binding protein {ECO:0000313|EMBL:KEA05644.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 87.0
  • Coverage: 386.0
  • Bit_score: 716
  • Evalue 2.50e-203

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Agrobacterium rhizogenes → Agrobacterium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1161
ATGACGACGTTCATGCGATCCTGCACAGCGCTTGTCGCAACTTTAAGCTTTGCTACGCAAGTCATTGCAGCCGAACCGCTCAAGGAACTGGGCAAGGGCGAGGGTGCGGTCAGCATCGTTGCCTGGGCCGGTTACATCGAGCGCGGCGAGACCGACAAGAATTACGACTGGGTGACCAAGTTCGAAGCCGACACCGGCTGCAAGGTCACCGTCAAGACCGCCGCCACCTCCGATGAAATGGTGGCGCTGATGAACGAAGGCGGCTTCGACCTCGTCACCGCTTCGGGCGACGCCTCGCTGCGCCTCGTTGCCGGCAAGCGCGTCCAGCCGATCAACACCGATCTCATCCCGAGCTGGAAGACGATCGACGAGCGGCTGCAGAACGCCGCCTGGCACACGCAGGACGGCGTGCATTACGGCACGCCCTATGTCTGGGGCGCCAACGTGCTGATGTACAACACCGATGCCTTCAAGGACAAGGCGCCGGACAGCTGGAACGTCGTCTTCGAAGAGCAGACCCTGCCGGACGGCAAGTCGAATTCCGGCCGCGTCCAGGCCTATGACGGCCCGATCTACATCGCCGACGCCGCGCTCTACCTGATGACCCACAAGCCGGAACTCGGCATCAAGGATCCCTACGAGCTGAACGAAGACCAGTACAAGGCGGCCCTCGACCTGCTGCGCGGCCAGCGCAAGCTGGTCGGCCGTTACTGGCACGACGCGATGATCCAGATCGACGACTTCAAGAACGAAGGCATCGTCGCCTCCGGTTCATGGCCGTTCATGGTCAACCTGCTGACCGCCGAAAAGGCCAAGATCGCCTCCACCTTCCCGAAGGAAGGCATCACCGGCTGGGCCGACACCACCATGCTGCATGTCGACAGCGAACATCCGAACTGCGCCTATATGTGGATGGAGCATTCGCTTTCGCCCAAGGTCCAGGGCGATGTTTCGGCCTGGTTCGGCACCGTTCCGTCCGTTCCGGCGGCCTGCAAGGGCAATGAACTGCTGACCGACAGCGGTTGCGCTACCAACGGTTACGAGCATTTCGACCAGATCAAGTTCTGGAAGACGCCGCGTGCCAAGTGCGAAAGCCAGGGCGAGTGCGTGCCGTATCACCGCTGGGTTTCGGATTATATCGGTGTGATCGGCGGTCGCTGA
PROTEIN sequence
Length: 387
MTTFMRSCTALVATLSFATQVIAAEPLKELGKGEGAVSIVAWAGYIERGETDKNYDWVTKFEADTGCKVTVKTAATSDEMVALMNEGGFDLVTASGDASLRLVAGKRVQPINTDLIPSWKTIDERLQNAAWHTQDGVHYGTPYVWGANVLMYNTDAFKDKAPDSWNVVFEEQTLPDGKSNSGRVQAYDGPIYIADAALYLMTHKPELGIKDPYELNEDQYKAALDLLRGQRKLVGRYWHDAMIQIDDFKNEGIVASGSWPFMVNLLTAEKAKIASTFPKEGITGWADTTMLHVDSEHPNCAYMWMEHSLSPKVQGDVSAWFGTVPSVPAACKGNELLTDSGCATNGYEHFDQIKFWKTPRAKCESQGECVPYHRWVSDYIGVIGGR*