ggKbase home page

SCNpilot_expt_1000_bf_scaffold_1029_curated_11

Organism: scnpilot_dereplicated_Sphingobacteriales_5

near complete RP 46 / 55 MC: 2 BSCG 41 / 51 MC: 1 ASCG 9 / 38
Location: 10673..11173

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Niabella soli DSM 19437 RepID=H1NUN1_9SPHI similarity UNIREF
DB: UNIREF100
  • Identity: 84.3
  • Coverage: 166.0
  • Bit_score: 289
  • Evalue 2.30e-75
RNA polymerase sigma factor {ECO:0000313|EMBL:AHF15744.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 84.3
  • Coverage: 166.0
  • Bit_score: 289
  • Evalue 3.20e-75
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 65.7
  • Coverage: 166.0
  • Bit_score: 228
  • Evalue 2.00e-57

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Niabella soli → Niabella → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 501
ATGGCAAAAAAGGACTTTAATGACTTACTGGTAGAGAACTCAGATTTTTTGAAACCCTTTGCCGTTAATCTTACAAAAAACAACGAATCTGCTAACGATTTATATCAGGAAACCCTGTACAAAGCGCTCGCCAATTACGATAAATACAACCGCGGTACCAATATTAAGGCATGGTTATTCACTATCATGCGTAATATTTTCATCAATGATTACCGCCGCAATGCCAAGCGCAGAACCGTTTTTGACAGTACACCGGAGGATTACCTGATAAACCTCAGTCAGGTAGCTGTTTCTAATTCCGCAGAAGGCGTACTCAGGGAAAAAGAAATTCTGAAAGCAATTGACGGCCTCCCCGAGACATTTAAAGTACCCTTTCAATTGTATTTTGACGGGTTTAAGTATCAGGAAATAGCCGAATATCTTGATGAGCCACTTGGCACAATCAAAAGCCGCATACACTTTGCCCGCAAATTGCTGAAAGAACAGATAAGAAGATATTGA
PROTEIN sequence
Length: 167
MAKKDFNDLLVENSDFLKPFAVNLTKNNESANDLYQETLYKALANYDKYNRGTNIKAWLFTIMRNIFINDYRRNAKRRTVFDSTPEDYLINLSQVAVSNSAEGVLREKEILKAIDGLPETFKVPFQLYFDGFKYQEIAEYLDEPLGTIKSRIHFARKLLKEQIRRY*